Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 AC006058.3-201ENST00000606217 1069 ntBASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 IRX1P1-201ENST00000438849 1838 ntBASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 FP475955.4-201ENST00000623131 1990 ntBASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
DEPDC4Q8N2C3 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 NOC2LP1-202ENST00000452600 2235 ntBASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 AL512353.2-201ENST00000448759 1962 ntBASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 NOC2LP2-201ENST00000407594 1944 ntBASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 KRT17P3-201ENST00000420566 1262 ntBASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 PNMA6B-201ENST00000538162 1200 ntBASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
DEPDC4Q8N2C3 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 AL133373.2-201ENST00000623187 2828 ntBASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.58■□□□□ 0.41
DEPDC4Q8N2C3 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 AL390719.1-204ENST00000412397 1219 ntBASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
DEPDC4Q8N2C3 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
DEPDC4Q8N2C3 AC116351.2-201ENST00000606540 1585 ntBASIC17.57■□□□□ 0.4
DEPDC4Q8N2C3 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.57■□□□□ 0.4
DEPDC4Q8N2C3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms