Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 AC009237.14-201ENST00000609975 1594 ntBASIC20.5■□□□□ 0.87
VPS52Q8N1B4 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
VPS52Q8N1B4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 AC009947.2-201ENST00000444014 672 ntBASIC20.49■□□□□ 0.87
VPS52Q8N1B4 AL671277.2-201ENST00000458060 996 ntBASIC20.49■□□□□ 0.87
VPS52Q8N1B4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 KRT18P56-201ENST00000507275 550 ntBASIC20.49■□□□□ 0.87
VPS52Q8N1B4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 KRT8P11-201ENST00000409686 1436 ntBASIC20.49■□□□□ 0.87
VPS52Q8N1B4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS52Q8N1B4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 IER3-202ENST00000376377 1350 ntBASIC20.48■□□□□ 0.87
VPS52Q8N1B4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS52Q8N1B4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.47■□□□□ 0.87
VPS52Q8N1B4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 PRSS44-201ENST00000515154 1146 ntBASIC20.47■□□□□ 0.87
VPS52Q8N1B4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 AC008622.2-201ENST00000617006 1229 ntBASIC20.47■□□□□ 0.87
VPS52Q8N1B4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS52Q8N1B4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS52Q8N1B4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms