Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC25.69■■□□□ 1.7
NPHP3Q7Z494 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 AC092183.1-201ENST00000469884 875 ntBASIC25.68■■□□□ 1.7
NPHP3Q7Z494 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
NPHP3Q7Z494 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 MIR1233-2-201ENST00000408138 82 ntBASIC25.67■■□□□ 1.7
NPHP3Q7Z494 MIR1233-1-201ENST00000408722 82 ntBASIC25.67■■□□□ 1.7
NPHP3Q7Z494 NUS1P2-201ENST00000417358 873 ntBASIC25.67■■□□□ 1.7
NPHP3Q7Z494 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 RN7SL606P-201ENST00000472779 293 ntBASIC25.67■■□□□ 1.7
NPHP3Q7Z494 CDV3-207ENST00000508481 661 ntTSL 3 BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 MOK-208ENST00000519058 917 ntTSL 2 BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
NPHP3Q7Z494 AL109659.2-201ENST00000606809 1674 ntBASIC25.67■■□□□ 1.7
NPHP3Q7Z494 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 AP005901.3-202ENST00000581653 237 ntBASIC25.66■■□□□ 1.7
NPHP3Q7Z494 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
NPHP3Q7Z494 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 IGHGP-201ENST00000390555 1178 ntBASIC25.65■■□□□ 1.7
NPHP3Q7Z494 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 VENTXP7-201ENST00000475503 772 ntBASIC25.65■■□□□ 1.7
NPHP3Q7Z494 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
NPHP3Q7Z494 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 AC092865.5-201ENST00000545435 363 ntBASIC25.64■■□□□ 1.7
NPHP3Q7Z494 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 ABBA01031661.1-201ENST00000634362 1253 ntBASIC25.64■■□□□ 1.7
NPHP3Q7Z494 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
NPHP3Q7Z494 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC25.64■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms