Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.69□□□□□ -0.22
PRKDCP78527 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC13.69□□□□□ -0.22
PRKDCP78527 AC025062.2-201ENST00000605477 670 ntBASIC13.69□□□□□ -0.22
PRKDCP78527 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.69□□□□□ -0.22
PRKDCP78527 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
PRKDCP78527 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC13.69□□□□□ -0.22
PRKDCP78527 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 KRT18P28-201ENST00000453838 1332 ntBASIC13.69□□□□□ -0.22
PRKDCP78527 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
PRKDCP78527 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC13.69□□□□□ -0.22
PRKDCP78527 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.69□□□□□ -0.22
PRKDCP78527 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC13.69□□□□□ -0.22
PRKDCP78527 AL096865.1-201ENST00000606796 927 ntBASIC13.69□□□□□ -0.22
PRKDCP78527 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.69□□□□□ -0.22
PRKDCP78527 AC244015.2-201ENST00000616358 1861 ntBASIC13.69□□□□□ -0.22
PRKDCP78527 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC13.69□□□□□ -0.22
PRKDCP78527 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.69□□□□□ -0.22
PRKDCP78527 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.69□□□□□ -0.22
PRKDCP78527 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.69□□□□□ -0.22
PRKDCP78527 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PRKDCP78527 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
PRKDCP78527 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.68□□□□□ -0.22
PRKDCP78527 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
PRKDCP78527 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.68□□□□□ -0.22
PRKDCP78527 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.68□□□□□ -0.22
PRKDCP78527 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.68□□□□□ -0.22
PRKDCP78527 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC13.68□□□□□ -0.22
PRKDCP78527 AL645939.2-201ENST00000427340 991 ntBASIC13.68□□□□□ -0.22
PRKDCP78527 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC13.68□□□□□ -0.22
PRKDCP78527 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
PRKDCP78527 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 AC023274.1-201ENST00000418278 595 ntBASIC13.68□□□□□ -0.22
PRKDCP78527 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC13.68□□□□□ -0.22
PRKDCP78527 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.68□□□□□ -0.22
PRKDCP78527 RBM7-207ENST00000544582 692 ntTSL 3 BASIC13.68□□□□□ -0.22
PRKDCP78527 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.68□□□□□ -0.22
PRKDCP78527 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PRKDCP78527 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
PRKDCP78527 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC13.67□□□□□ -0.22
PRKDCP78527 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 IGHGP-201ENST00000390555 1178 ntBASIC13.67□□□□□ -0.22
PRKDCP78527 RPL28-205ENST00000558131 444 ntTSL 5 BASIC13.67□□□□□ -0.22
PRKDCP78527 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.67□□□□□ -0.22
PRKDCP78527 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC13.67□□□□□ -0.22
PRKDCP78527 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
PRKDCP78527 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC13.67□□□□□ -0.22
PRKDCP78527 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.67□□□□□ -0.22
PRKDCP78527 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.67□□□□□ -0.22
PRKDCP78527 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC13.67□□□□□ -0.22
PRKDCP78527 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.67□□□□□ -0.22
PRKDCP78527 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.67□□□□□ -0.22
PRKDCP78527 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.67□□□□□ -0.22
PRKDCP78527 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC13.67□□□□□ -0.22
PRKDCP78527 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
PRKDCP78527 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PRKDCP78527 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 MIR770-201ENST00000390219 98 ntBASIC13.66□□□□□ -0.22
PRKDCP78527 MINOS1P3-201ENST00000457048 203 ntBASIC13.66□□□□□ -0.22
PRKDCP78527 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.66□□□□□ -0.22
PRKDCP78527 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.66□□□□□ -0.22
PRKDCP78527 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC13.66□□□□□ -0.22
PRKDCP78527 AC002347.1-201ENST00000569543 541 ntBASIC13.66□□□□□ -0.22
PRKDCP78527 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC13.66□□□□□ -0.22
PRKDCP78527 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms