Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
RAE1P78406 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
RAE1P78406 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.98■□□□□ 0.47
RAE1P78406 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RAE1P78406 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
RAE1P78406 KRT8P3-201ENST00000519669 1449 ntBASIC17.98■□□□□ 0.47
RAE1P78406 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.98■□□□□ 0.47
RAE1P78406 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
RAE1P78406 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.97■□□□□ 0.47
RAE1P78406 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.97■□□□□ 0.47
RAE1P78406 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 KRT8P32-201ENST00000512863 1461 ntBASIC17.97■□□□□ 0.47
RAE1P78406 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
RAE1P78406 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
RAE1P78406 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
RAE1P78406 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
RAE1P78406 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.97■□□□□ 0.47
RAE1P78406 AC090164.3-201ENST00000610780 2143 ntBASIC17.97■□□□□ 0.47
RAE1P78406 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RAE1P78406 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.97■□□□□ 0.47
RAE1P78406 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
RAE1P78406 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RAE1P78406 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
RAE1P78406 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.96■□□□□ 0.47
RAE1P78406 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.96■□□□□ 0.47
RAE1P78406 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.96■□□□□ 0.47
RAE1P78406 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.96■□□□□ 0.47
RAE1P78406 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.96■□□□□ 0.47
RAE1P78406 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
RAE1P78406 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.96■□□□□ 0.47
RAE1P78406 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.96■□□□□ 0.47
RAE1P78406 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 FAM207BP-201ENST00000447172 505 ntBASIC17.96■□□□□ 0.47
RAE1P78406 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.96■□□□□ 0.47
RAE1P78406 CD177P1-201ENST00000606252 935 ntBASIC17.96■□□□□ 0.47
RAE1P78406 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
RAE1P78406 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.96■□□□□ 0.47
RAE1P78406 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
RAE1P78406 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.96■□□□□ 0.47
RAE1P78406 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.96■□□□□ 0.47
RAE1P78406 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.96■□□□□ 0.46
RAE1P78406 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.46
RAE1P78406 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
RAE1P78406 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
RAE1P78406 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.95■□□□□ 0.46
RAE1P78406 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
RAE1P78406 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.95■□□□□ 0.46
RAE1P78406 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
RAE1P78406 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 AL158047.1-201ENST00000445918 881 ntBASIC17.95■□□□□ 0.46
RAE1P78406 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.95■□□□□ 0.46
RAE1P78406 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
RAE1P78406 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.95■□□□□ 0.46
RAE1P78406 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.95■□□□□ 0.46
RAE1P78406 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RAE1P78406 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.95■□□□□ 0.46
RAE1P78406 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.94■□□□□ 0.46
RAE1P78406 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RAE1P78406 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RAE1P78406 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RAE1P78406 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RAE1P78406 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.94■□□□□ 0.46
RAE1P78406 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.94■□□□□ 0.46
RAE1P78406 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RAE1P78406 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
RAE1P78406 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RAE1P78406 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms