Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PKNOX1P55347 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.57■□□□□ 0.56
PKNOX1P55347 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.57■□□□□ 0.56
PKNOX1P55347 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PKNOX1P55347 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PKNOX1P55347 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.57■□□□□ 0.56
PKNOX1P55347 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PKNOX1P55347 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
PKNOX1P55347 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.57■□□□□ 0.56
PKNOX1P55347 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PKNOX1P55347 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.57■□□□□ 0.56
PKNOX1P55347 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.57■□□□□ 0.56
PKNOX1P55347 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.57■□□□□ 0.56
PKNOX1P55347 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PKNOX1P55347 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PKNOX1P55347 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.57■□□□□ 0.56
PKNOX1P55347 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PKNOX1P55347 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PKNOX1P55347 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
PKNOX1P55347 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
PKNOX1P55347 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
PKNOX1P55347 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.56■□□□□ 0.56
PKNOX1P55347 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.56■□□□□ 0.56
PKNOX1P55347 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.56■□□□□ 0.56
PKNOX1P55347 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.56■□□□□ 0.56
PKNOX1P55347 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
PKNOX1P55347 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.56■□□□□ 0.56
PKNOX1P55347 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.56■□□□□ 0.56
PKNOX1P55347 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PKNOX1P55347 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.56■□□□□ 0.56
PKNOX1P55347 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.56■□□□□ 0.56
PKNOX1P55347 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.55■□□□□ 0.56
PKNOX1P55347 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.55■□□□□ 0.56
PKNOX1P55347 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.55■□□□□ 0.56
PKNOX1P55347 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.55■□□□□ 0.56
PKNOX1P55347 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.55■□□□□ 0.56
PKNOX1P55347 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
PKNOX1P55347 NBPF21P-201ENST00000425093 1451 ntBASIC18.55■□□□□ 0.56
PKNOX1P55347 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.55■□□□□ 0.56
PKNOX1P55347 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.55■□□□□ 0.56
PKNOX1P55347 AC092666.2-201ENST00000613287 246 ntBASIC18.55■□□□□ 0.56
PKNOX1P55347 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
PKNOX1P55347 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
PKNOX1P55347 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
PKNOX1P55347 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
PKNOX1P55347 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.54■□□□□ 0.56
PKNOX1P55347 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PKNOX1P55347 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
PKNOX1P55347 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
PKNOX1P55347 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.54■□□□□ 0.56
PKNOX1P55347 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.54■□□□□ 0.56
PKNOX1P55347 C1QL1P1-201ENST00000568105 661 ntBASIC18.54■□□□□ 0.56
PKNOX1P55347 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.54■□□□□ 0.56
PKNOX1P55347 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 AC004264.1-201ENST00000608354 794 ntBASIC18.54■□□□□ 0.56
PKNOX1P55347 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
PKNOX1P55347 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms