Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CDX1P47902 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 KRT16P6-202ENST00000425692 1426 ntBASIC15.43■□□□□ 0.06
CDX1P47902 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.43■□□□□ 0.06
CDX1P47902 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC15.43■□□□□ 0.06
CDX1P47902 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
CDX1P47902 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 KRASP1-201ENST00000407852 552 ntBASIC15.43■□□□□ 0.06
CDX1P47902 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC15.43■□□□□ 0.06
CDX1P47902 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC15.43■□□□□ 0.06
CDX1P47902 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC15.43■□□□□ 0.06
CDX1P47902 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.43■□□□□ 0.06
CDX1P47902 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDX1P47902 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC15.43■□□□□ 0.06
CDX1P47902 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.43■□□□□ 0.06
CDX1P47902 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.42■□□□□ 0.06
CDX1P47902 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CDX1P47902 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CDX1P47902 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.42■□□□□ 0.06
CDX1P47902 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CDX1P47902 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
CDX1P47902 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC15.42■□□□□ 0.06
CDX1P47902 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.42■□□□□ 0.06
CDX1P47902 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDX1P47902 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.42■□□□□ 0.06
CDX1P47902 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CDX1P47902 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.41■□□□□ 0.06
CDX1P47902 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.41■□□□□ 0.06
CDX1P47902 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CDX1P47902 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.41■□□□□ 0.06
CDX1P47902 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC15.41■□□□□ 0.06
CDX1P47902 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CDX1P47902 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC15.41■□□□□ 0.06
CDX1P47902 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC15.41■□□□□ 0.06
CDX1P47902 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
CDX1P47902 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.41■□□□□ 0.06
CDX1P47902 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC15.41■□□□□ 0.06
CDX1P47902 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.41■□□□□ 0.06
CDX1P47902 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.41■□□□□ 0.06
CDX1P47902 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
CDX1P47902 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.41■□□□□ 0.06
CDX1P47902 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC15.41■□□□□ 0.06
CDX1P47902 AL135905.2-201ENST00000584934 1404 ntBASIC15.41■□□□□ 0.06
CDX1P47902 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.41■□□□□ 0.06
CDX1P47902 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms