Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN9P43378 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.69■□□□□ 0.74
PTPN9P43378 AL596275.1-201ENST00000423464 877 ntBASIC19.69■□□□□ 0.74
PTPN9P43378 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.69■□□□□ 0.74
PTPN9P43378 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN9P43378 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
PTPN9P43378 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN9P43378 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN9P43378 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PTPN9P43378 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
PTPN9P43378 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.68■□□□□ 0.74
PTPN9P43378 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.68■□□□□ 0.74
PTPN9P43378 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
PTPN9P43378 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.68■□□□□ 0.74
PTPN9P43378 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.68■□□□□ 0.74
PTPN9P43378 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.68■□□□□ 0.74
PTPN9P43378 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.68■□□□□ 0.74
PTPN9P43378 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
PTPN9P43378 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.68■□□□□ 0.74
PTPN9P43378 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 Z98044.1-201ENST00000632503 1764 ntBASIC19.67■□□□□ 0.74
PTPN9P43378 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
PTPN9P43378 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 TSPY15P-201ENST00000457163 923 ntBASIC19.67■□□□□ 0.74
PTPN9P43378 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.67■□□□□ 0.74
PTPN9P43378 AC008622.2-201ENST00000617006 1229 ntBASIC19.67■□□□□ 0.74
PTPN9P43378 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.67■□□□□ 0.74
PTPN9P43378 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
PTPN9P43378 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.67■□□□□ 0.74
PTPN9P43378 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
PTPN9P43378 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
PTPN9P43378 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.67■□□□□ 0.74
PTPN9P43378 AC004408.2-201ENST00000623613 2777 ntBASIC19.66■□□□□ 0.74
PTPN9P43378 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
PTPN9P43378 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
PTPN9P43378 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.66■□□□□ 0.74
PTPN9P43378 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.66■□□□□ 0.74
PTPN9P43378 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.66■□□□□ 0.74
PTPN9P43378 MIR1238-201ENST00000408483 83 ntBASIC19.66■□□□□ 0.74
PTPN9P43378 AL390955.1-201ENST00000428694 934 ntBASIC19.66■□□□□ 0.74
PTPN9P43378 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.66■□□□□ 0.74
PTPN9P43378 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.66■□□□□ 0.74
PTPN9P43378 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PTPN9P43378 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.66■□□□□ 0.74
PTPN9P43378 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.66■□□□□ 0.74
PTPN9P43378 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PTPN9P43378 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.66■□□□□ 0.74
PTPN9P43378 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PTPN9P43378 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
PTPN9P43378 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN9P43378 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN9P43378 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.65■□□□□ 0.74
PTPN9P43378 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
PTPN9P43378 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
PTPN9P43378 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.65■□□□□ 0.74
PTPN9P43378 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN9P43378 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.65■□□□□ 0.74
PTPN9P43378 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN9P43378 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.65■□□□□ 0.74
PTPN9P43378 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
PTPN9P43378 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.65■□□□□ 0.74
PTPN9P43378 SLC25A1P2-201ENST00000430693 912 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms