Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.32■□□□□ 0.36
RFC3P40938 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RFC3P40938 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.32■□□□□ 0.36
RFC3P40938 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.32■□□□□ 0.36
RFC3P40938 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.32■□□□□ 0.36
RFC3P40938 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.32■□□□□ 0.36
RFC3P40938 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
RFC3P40938 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.32■□□□□ 0.36
RFC3P40938 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFC3P40938 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC17.32■□□□□ 0.36
RFC3P40938 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
RFC3P40938 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RFC3P40938 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 TREX1-205ENST00000625293 1783 ntBASIC17.31■□□□□ 0.36
RFC3P40938 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RFC3P40938 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.31■□□□□ 0.36
RFC3P40938 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.31■□□□□ 0.36
RFC3P40938 RNF152P1-201ENST00000397754 604 ntBASIC17.31■□□□□ 0.36
RFC3P40938 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.31■□□□□ 0.36
RFC3P40938 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.31■□□□□ 0.36
RFC3P40938 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.31■□□□□ 0.36
RFC3P40938 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.31■□□□□ 0.36
RFC3P40938 AC063952.2-201ENST00000498792 1227 ntBASIC17.31■□□□□ 0.36
RFC3P40938 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.31■□□□□ 0.36
RFC3P40938 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.31■□□□□ 0.36
RFC3P40938 AC011558.1-201ENST00000623459 338 ntBASIC17.31■□□□□ 0.36
RFC3P40938 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
RFC3P40938 AL158211.5-201ENST00000623583 2518 ntBASIC17.31■□□□□ 0.36
RFC3P40938 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.31■□□□□ 0.36
RFC3P40938 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.31■□□□□ 0.36
RFC3P40938 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.31■□□□□ 0.36
RFC3P40938 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RFC3P40938 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.31■□□□□ 0.36
RFC3P40938 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFC3P40938 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.3■□□□□ 0.36
RFC3P40938 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.3■□□□□ 0.36
RFC3P40938 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.3■□□□□ 0.36
RFC3P40938 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
RFC3P40938 AC092647.4-201ENST00000457211 535 ntBASIC17.3■□□□□ 0.36
RFC3P40938 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.3■□□□□ 0.36
RFC3P40938 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
RFC3P40938 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.3■□□□□ 0.36
RFC3P40938 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RFC3P40938 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RFC3P40938 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.3■□□□□ 0.36
RFC3P40938 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RFC3P40938 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFC3P40938 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
RFC3P40938 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.29■□□□□ 0.36
RFC3P40938 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.29■□□□□ 0.36
RFC3P40938 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
RFC3P40938 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFC3P40938 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms