Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
MSX1P28360 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
MSX1P28360 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
MSX1P28360 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
MSX1P28360 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX1P28360 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX1P28360 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.34■□□□□ 0.37
MSX1P28360 IRX1P1-201ENST00000438849 1838 ntBASIC17.34■□□□□ 0.37
MSX1P28360 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.34■□□□□ 0.37
MSX1P28360 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX1P28360 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.34■□□□□ 0.37
MSX1P28360 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX1P28360 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.34■□□□□ 0.37
MSX1P28360 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.34■□□□□ 0.37
MSX1P28360 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.34■□□□□ 0.37
MSX1P28360 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX1P28360 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.34■□□□□ 0.37
MSX1P28360 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
MSX1P28360 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX1P28360 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MSX1P28360 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.34■□□□□ 0.37
MSX1P28360 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MSX1P28360 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSX1P28360 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSX1P28360 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MSX1P28360 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.33■□□□□ 0.37
MSX1P28360 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.33■□□□□ 0.37
MSX1P28360 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSX1P28360 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSX1P28360 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
MSX1P28360 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.33■□□□□ 0.37
MSX1P28360 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.33■□□□□ 0.37
MSX1P28360 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 CRYGFP-201ENST00000418459 633 ntBASIC17.33■□□□□ 0.36
MSX1P28360 MFAP1P1-201ENST00000442257 1255 ntBASIC17.33■□□□□ 0.36
MSX1P28360 CA15P1-201ENST00000481698 905 ntBASIC17.33■□□□□ 0.36
MSX1P28360 DUX4L26-201ENST00000489078 1255 ntBASIC17.33■□□□□ 0.36
MSX1P28360 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.33■□□□□ 0.36
MSX1P28360 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
MSX1P28360 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
MSX1P28360 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.33■□□□□ 0.36
MSX1P28360 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MSX1P28360 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.32■□□□□ 0.36
MSX1P28360 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
MSX1P28360 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.32■□□□□ 0.36
MSX1P28360 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
MSX1P28360 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.32■□□□□ 0.36
MSX1P28360 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.32■□□□□ 0.36
MSX1P28360 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MSX1P28360 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSX1P28360 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX1P28360 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX1P28360 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.31■□□□□ 0.36
MSX1P28360 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
MSX1P28360 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.31■□□□□ 0.36
MSX1P28360 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.31■□□□□ 0.36
MSX1P28360 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
MSX1P28360 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
MSX1P28360 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.31■□□□□ 0.36
MSX1P28360 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX1P28360 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX1P28360 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.31■□□□□ 0.36
MSX1P28360 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
MSX1P28360 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX1P28360 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.31■□□□□ 0.36
MSX1P28360 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
MSX1P28360 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.31■□□□□ 0.36
MSX1P28360 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.31■□□□□ 0.36
MSX1P28360 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.31■□□□□ 0.36
MSX1P28360 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MSX1P28360 C2orf69P3-201ENST00000565542 1120 ntBASIC17.31■□□□□ 0.36
MSX1P28360 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MSX1P28360 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.31■□□□□ 0.36
MSX1P28360 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms