Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HMGA1P17096 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGA1P17096 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.66■□□□□ 0.74
HMGA1P17096 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.66■□□□□ 0.74
HMGA1P17096 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
HMGA1P17096 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGA1P17096 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.66■□□□□ 0.74
HMGA1P17096 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 KRT8P32-201ENST00000512863 1461 ntBASIC19.66■□□□□ 0.74
HMGA1P17096 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGA1P17096 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
HMGA1P17096 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
HMGA1P17096 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGA1P17096 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGA1P17096 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
HMGA1P17096 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
HMGA1P17096 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 AC034232.1-201ENST00000506026 1064 ntBASIC19.65■□□□□ 0.74
HMGA1P17096 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGA1P17096 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGA1P17096 AC093484.2-201ENST00000580996 2166 ntBASIC19.65■□□□□ 0.74
HMGA1P17096 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGA1P17096 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGA1P17096 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGA1P17096 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.64■□□□□ 0.74
HMGA1P17096 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.64■□□□□ 0.74
HMGA1P17096 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.74
HMGA1P17096 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
HMGA1P17096 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGA1P17096 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGA1P17096 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGA1P17096 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.64■□□□□ 0.73
HMGA1P17096 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.64■□□□□ 0.73
HMGA1P17096 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.64■□□□□ 0.73
HMGA1P17096 AC112497.1-201ENST00000624824 639 ntBASIC19.64■□□□□ 0.73
HMGA1P17096 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGA1P17096 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGA1P17096 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGA1P17096 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.64■□□□□ 0.73
HMGA1P17096 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGA1P17096 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGA1P17096 AL032819.2-201ENST00000624543 2162 ntBASIC19.64■□□□□ 0.73
HMGA1P17096 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGA1P17096 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGA1P17096 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGA1P17096 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HMGA1P17096 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGA1P17096 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HMGA1P17096 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGA1P17096 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HMGA1P17096 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGA1P17096 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
HMGA1P17096 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
HMGA1P17096 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.63■□□□□ 0.73
HMGA1P17096 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HMGA1P17096 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HMGA1P17096 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGA1P17096 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGA1P17096 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
HMGA1P17096 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HMGA1P17096 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGA1P17096 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HMGA1P17096 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms