Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC17.57■□□□□ 0.43e-7■■□□□ 14
YBX3P16989 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC16.88■□□□□ 0.293e-7■■□□□ 14
YBX3P16989 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.721e-8■■□□□ 14
YBX3P16989 UBE2I-208ENST00000473256 1771 ntTSL 223.16■■□□□ 1.31e-6■■□□□ 14
YBX3P16989 UBE2I-217ENST00000568209 266 ntTSL 522.52■■□□□ 1.21e-6■■□□□ 14
YBX3P16989 UBE2I-218ENST00000568288 501 ntTSL 521.85■■□□□ 1.091e-6■■□□□ 14
YBX3P16989 UBE2I-210ENST00000562482 735 ntTSL 221.84■■□□□ 1.091e-6■■□□□ 14
YBX3P16989 RPL37A-213ENST00000624436 559 nt7.46□□□□□ -1.221e-6■■□□□ 14
YBX3P16989 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC28.09■■■□□ 2.099e-7■■□□□ 14
YBX3P16989 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.689e-7■■□□□ 14
YBX3P16989 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC24■■□□□ 1.439e-7■■□□□ 14
YBX3P16989 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.98■□□□□ 0.799e-7■■□□□ 14
YBX3P16989 HADH-216ENST00000639335 1327 ntTSL 518.53■□□□□ 0.569e-7■■□□□ 14
YBX3P16989 HADH-220ENST00000640060 1895 ntTSL 515.43■□□□□ 0.069e-7■■□□□ 14
YBX3P16989 HADH-215ENST00000639146 1964 ntTSL 515.43■□□□□ 0.069e-7■■□□□ 14
YBX3P16989 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.45□□□□□ -0.19e-7■■□□□ 14
YBX3P16989 HADH-211ENST00000638559 1369 ntTSL 514.26□□□□□ -0.139e-7■■□□□ 14
YBX3P16989 HADH-223ENST00000640752 5948 ntTSL 512.39□□□□□ -0.439e-7■■□□□ 14
YBX3P16989 HADH-204ENST00000507260 3057 ntTSL 211.33□□□□□ -0.69e-7■■□□□ 14
YBX3P16989 IQSEC1-204ENST00000613206 3582 ntTSL 2 BASIC12.79□□□□□ -0.364e-8■■□□□ 14
YBX3P16989 IQSEC1-205ENST00000618604 3744 ntTSL 1 (best) BASIC11.15□□□□□ -0.624e-8■■□□□ 14
YBX3P16989 CCND2-201ENST00000261254 6480 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.628e-7■■□□□ 14
YBX3P16989 ATP5A1-208ENST00000589252 662 ntTSL 526.04■■□□□ 1.761e-9■■□□□ 14
YBX3P16989 ATP5A1-213ENST00000590406 756 ntTSL 326.04■■□□□ 1.761e-9■■□□□ 14
YBX3P16989 ATP5A1-210ENST00000589869 910 ntTSL 320.52■□□□□ 0.881e-9■■□□□ 14
YBX3P16989 ATP5A1-217ENST00000591981 565 ntTSL 419.19■□□□□ 0.661e-9■■□□□ 14
YBX3P16989 ATP5A1-214ENST00000590448 604 ntTSL 217.3■□□□□ 0.361e-9■■□□□ 14
YBX3P16989 ATP5A1-219ENST00000592989 553 ntTSL 513.43□□□□□ -0.261e-9■■□□□ 14
YBX3P16989 ATP5A1-212ENST00000590324 807 ntTSL 513.28□□□□□ -0.281e-9■■□□□ 14
YBX3P16989 ATP5A1-209ENST00000589611 995 ntTSL 212.2□□□□□ -0.461e-9■■□□□ 14
YBX3P16989 ATP5A1-203ENST00000585650 520 ntTSL 59.28□□□□□ -0.921e-9■■□□□ 14
YBX3P16989 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.148e-8■■□□□ 14
YBX3P16989 ATP6V0B-202ENST00000461670 530 ntTSL 523.87■■□□□ 1.411e-9■■□□□ 14
YBX3P16989 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC22.09■■□□□ 1.132e-6■■□□□ 14
YBX3P16989 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.84e-7■■□□□ 14
YBX3P16989 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.64e-7■■□□□ 14
YBX3P16989 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.444e-7■■□□□ 14
YBX3P16989 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.434e-7■■□□□ 14
YBX3P16989 SUZ12-203ENST00000578106 1367 ntTSL 27.93□□□□□ -1.141e-7■■□□□ 14
YBX3P16989 BACH1-208ENST00000468059 663 ntTSL 37.29□□□□□ -1.248e-7■■□□□ 14
YBX3P16989 BACH1-203ENST00000422809 850 ntTSL 57.29□□□□□ -1.248e-7■■□□□ 14
YBX3P16989 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.338e-7■■□□□ 14
YBX3P16989 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.598e-7■■□□□ 14
YBX3P16989 DSCR3-209ENST00000488368 1013 ntTSL 1 (best)21.01■□□□□ 0.952e-6■■□□□ 14
YBX3P16989 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.84■□□□□ 0.932e-6■■□□□ 14
YBX3P16989 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC20.75■□□□□ 0.912e-6■■□□□ 14
YBX3P16989 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC20.1■□□□□ 0.812e-6■■□□□ 14
YBX3P16989 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC23.34■■□□□ 1.337e-8■■□□□ 14
YBX3P16989 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.23■□□□□ 0.197e-8■■□□□ 14
YBX3P16989 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.157e-8■■□□□ 14
YBX3P16989 WDR1-204ENST00000499869 3054 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.447e-8■■□□□ 14
YBX3P16989 CINP-203ENST00000541568 572 ntTSL 5 BASIC12.37□□□□□ -0.436e-8■■□□□ 14
YBX3P16989 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.621e-7■■□□□ 14
YBX3P16989 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC25.13■■□□□ 1.619e-7■■□□□ 14
YBX3P16989 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.899e-7■■□□□ 14
YBX3P16989 PGAM5-202ENST00000454808 1084 ntTSL 3 BASIC16.53■□□□□ 0.249e-7■■□□□ 14
YBX3P16989 DHX30-212ENST00000474183 963 ntTSL 218.57■□□□□ 0.563e-6■■□□□ 14
YBX3P16989 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.293e-6■■□□□ 14
YBX3P16989 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC14.13□□□□□ -0.153e-6■■□□□ 14
YBX3P16989 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.213e-6■■□□□ 14
YBX3P16989 DHX30-207ENST00000457607 3748 ntTSL 5 BASIC13.19□□□□□ -0.33e-6■■□□□ 14
YBX3P16989 DHX30-206ENST00000446256 3660 ntAPPRIS P2 TSL 2 BASIC12.97□□□□□ -0.333e-6■■□□□ 14
YBX3P16989 DHX30-202ENST00000395745 3887 ntTSL 1 (best)11.68□□□□□ -0.543e-6■■□□□ 14
YBX3P16989 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.73e-10■■□□□ 14
YBX3P16989 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.542e-9■■□□□ 14
YBX3P16989 SF1-211ENST00000448404 2778 ntTSL 1 (best)15.76■□□□□ 0.112e-9■■□□□ 14
YBX3P16989 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.41□□□□□ -0.12e-9■■□□□ 14
YBX3P16989 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.152e-9■■□□□ 14
YBX3P16989 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC13.97□□□□□ -0.172e-9■■□□□ 14
YBX3P16989 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.442e-9■■□□□ 14
YBX3P16989 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC7.43□□□□□ -1.222e-8■■□□□ 14
YBX3P16989 RUVBL1-206ENST00000480616 564 ntTSL 424.33■■□□□ 1.499e-9■■□□□ 14
YBX3P16989 RUVBL1-204ENST00000478243 395 ntTSL 310.42□□□□□ -0.749e-9■■□□□ 14
YBX3P16989 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.96□□□□□ -1.625e-7■■□□□ 14
YBX3P16989 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC26.44■■□□□ 1.826e-8■■□□□ 14
YBX3P16989 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.786e-8■■□□□ 14
YBX3P16989 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC25.79■■□□□ 1.726e-8■■□□□ 14
YBX3P16989 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.76e-8■■□□□ 14
YBX3P16989 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.426e-8■■□□□ 14
YBX3P16989 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.356e-8■■□□□ 14
YBX3P16989 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.316e-8■■□□□ 14
YBX3P16989 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC23.26■■□□□ 1.316e-8■■□□□ 14
YBX3P16989 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.926e-8■■□□□ 14
YBX3P16989 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.926e-8■■□□□ 14
YBX3P16989 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.766e-8■■□□□ 14
YBX3P16989 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC19.41■□□□□ 0.76e-8■■□□□ 14
YBX3P16989 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.41■□□□□ 0.76e-8■■□□□ 14
YBX3P16989 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC18.51■□□□□ 0.556e-8■■□□□ 14
YBX3P16989 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.496e-8■■□□□ 14
YBX3P16989 ANAPC11-205ENST00000571570 581 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.116e-8■■□□□ 14
YBX3P16989 IDE-206ENST00000478361 3198 ntTSL 1 (best)8.86□□□□□ -0.994e-6■■□□□ 14
YBX3P16989 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.974e-6■■□□□ 14
YBX3P16989 GAS5-203ENST00000416952 799 ntTSL 212.89□□□□□ -0.351e-25■■□□□ 14
YBX3P16989 GAS5-226ENST00000455838 632 ntTSL 210.42□□□□□ -0.741e-25■■□□□ 14
YBX3P16989 RPLP0-223ENST00000551783 676 ntTSL 226.23■■□□□ 1.791e-19■■□□□ 14
YBX3P16989 JAK1-201ENST00000342505 5047 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.581e-9■■□□□ 14
YBX3P16989 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.353e-7■■□□□ 14
YBX3P16989 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.823e-7■■□□□ 14
YBX3P16989 TMEM8A-202ENST00000424078 844 ntTSL 318.07■□□□□ 0.483e-7■■□□□ 14
YBX3P16989 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC19.42■□□□□ 0.74e-11■■□□□ 14
Retrieved 100 of 29,075 protein–RNA pairs in 435.9 ms