Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.82■□□□□ 0.76
APOEP02649 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
APOEP02649 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
APOEP02649 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.81■□□□□ 0.76
APOEP02649 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.81■□□□□ 0.76
APOEP02649 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.81■□□□□ 0.76
APOEP02649 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.81■□□□□ 0.76
APOEP02649 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.81■□□□□ 0.76
APOEP02649 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.81■□□□□ 0.76
APOEP02649 AC133561.5-201ENST00000635547 218 ntBASIC19.81■□□□□ 0.76
APOEP02649 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
APOEP02649 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 KRT8P9-201ENST00000558927 1449 ntBASIC19.81■□□□□ 0.76
APOEP02649 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.81■□□□□ 0.76
APOEP02649 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.81■□□□□ 0.76
APOEP02649 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
APOEP02649 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
APOEP02649 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.8■□□□□ 0.76
APOEP02649 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
APOEP02649 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
APOEP02649 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.8■□□□□ 0.76
APOEP02649 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.8■□□□□ 0.76
APOEP02649 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
APOEP02649 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.8■□□□□ 0.76
APOEP02649 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.8■□□□□ 0.76
APOEP02649 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
APOEP02649 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.79■□□□□ 0.76
APOEP02649 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
APOEP02649 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
APOEP02649 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.79■□□□□ 0.76
APOEP02649 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.79■□□□□ 0.76
APOEP02649 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.79■□□□□ 0.76
APOEP02649 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
APOEP02649 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.79■□□□□ 0.76
APOEP02649 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
APOEP02649 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
APOEP02649 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms