Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC15.85■□□□□ 0.13
ABCA1O95477 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
ABCA1O95477 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
ABCA1O95477 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.85■□□□□ 0.13
ABCA1O95477 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.85■□□□□ 0.13
ABCA1O95477 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.85■□□□□ 0.13
ABCA1O95477 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.85■□□□□ 0.13
ABCA1O95477 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.85■□□□□ 0.13
ABCA1O95477 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.85■□□□□ 0.13
ABCA1O95477 IFNL4P1-201ENST00000607083 540 ntBASIC15.85■□□□□ 0.13
ABCA1O95477 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
ABCA1O95477 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC15.85■□□□□ 0.13
ABCA1O95477 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
ABCA1O95477 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.84■□□□□ 0.13
ABCA1O95477 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 FDX1P1-201ENST00000449115 551 ntBASIC15.84■□□□□ 0.13
ABCA1O95477 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.84■□□□□ 0.13
ABCA1O95477 AC023511.2-201ENST00000618803 211 ntBASIC15.84■□□□□ 0.13
ABCA1O95477 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.84■□□□□ 0.13
ABCA1O95477 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.84■□□□□ 0.13
ABCA1O95477 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.84■□□□□ 0.13
ABCA1O95477 AL160286.2-201ENST00000567150 934 ntBASIC15.84■□□□□ 0.13
ABCA1O95477 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 BCL10-202ENST00000620248 774 ntTSL 5 BASIC15.84■□□□□ 0.13
ABCA1O95477 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
ABCA1O95477 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.84■□□□□ 0.13
ABCA1O95477 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
ABCA1O95477 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC15.84■□□□□ 0.13
ABCA1O95477 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
ABCA1O95477 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC15.83■□□□□ 0.13
ABCA1O95477 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.83■□□□□ 0.13
ABCA1O95477 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA1O95477 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA1O95477 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
ABCA1O95477 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.83■□□□□ 0.13
ABCA1O95477 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
ABCA1O95477 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC15.83■□□□□ 0.13
ABCA1O95477 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC15.83■□□□□ 0.13
ABCA1O95477 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA1O95477 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA1O95477 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA1O95477 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.83■□□□□ 0.13
ABCA1O95477 SPDYE15P-201ENST00000424157 909 ntBASIC15.83■□□□□ 0.13
ABCA1O95477 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
ABCA1O95477 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC15.83■□□□□ 0.13
ABCA1O95477 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC15.83■□□□□ 0.12
ABCA1O95477 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCA1O95477 AC092720.2-201ENST00000602388 1665 ntBASIC15.83■□□□□ 0.12
ABCA1O95477 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCA1O95477 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC15.83■□□□□ 0.12
ABCA1O95477 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.83■□□□□ 0.12
ABCA1O95477 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCA1O95477 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC15.83■□□□□ 0.12
ABCA1O95477 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCA1O95477 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCA1O95477 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.83■□□□□ 0.12
ABCA1O95477 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
ABCA1O95477 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.83■□□□□ 0.12
ABCA1O95477 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms