Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 AC091607.1-201ENST00000490318 1060 ntBASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 AC134684.3-201ENST00000641758 218 ntBASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 BID-203ENST00000399765 1879 ntTSL 2 BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL6A6A6NMZ7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 AP005901.3-202ENST00000581653 237 ntBASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 AC004832.2-201ENST00000426397 482 ntBASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 MIR3197-201ENST00000582241 73 ntBASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL6A6A6NMZ7 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 KRT18P23-201ENST00000435622 1283 ntBASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 AL691432.2-201ENST00000607222 2038 ntBASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 AL391422.3-201ENST00000603791 2761 ntBASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL6A6A6NMZ7 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 AP001271.2-201ENST00000624018 1556 ntBASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 DNAJB3-201ENST00000446806 729 ntBASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 SCARNA2-201ENST00000458748 420 ntBASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 AL356488.2-201ENST00000602755 427 ntBASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL6A6A6NMZ7 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL6A6A6NMZ7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.02■□□□□ 0.31
COL6A6A6NMZ7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL6A6A6NMZ7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.02■□□□□ 0.31
COL6A6A6NMZ7 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
COL6A6A6NMZ7 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms