Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SENP3Q9H4L4 SALL4P2-201ENST00000423288 2910 ntBASIC7.39□□□□□ -1.23
SENP3Q9H4L4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC7.39□□□□□ -1.23
SENP3Q9H4L4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
SENP3Q9H4L4 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC7.39□□□□□ -1.23
SENP3Q9H4L4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC7.38□□□□□ -1.23
SENP3Q9H4L4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SENP3Q9H4L4 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.38□□□□□ -1.23
SENP3Q9H4L4 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SENP3Q9H4L4 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC7.38□□□□□ -1.23
SENP3Q9H4L4 RNU6-546P-201ENST00000383991 107 ntBASIC7.38□□□□□ -1.23
SENP3Q9H4L4 RNU6-198P-201ENST00000384258 104 ntBASIC7.38□□□□□ -1.23
SENP3Q9H4L4 AC245047.3-201ENST00000429428 127 ntBASIC7.38□□□□□ -1.23
SENP3Q9H4L4 BX323845.1-201ENST00000432417 179 ntBASIC7.38□□□□□ -1.23
SENP3Q9H4L4 RN7SL297P-201ENST00000483161 293 ntBASIC7.38□□□□□ -1.23
SENP3Q9H4L4 AC091042.1-201ENST00000579213 173 ntBASIC7.38□□□□□ -1.23
SENP3Q9H4L4 UBA3-213ENST00000631029 123 ntTSL 5 BASIC7.38□□□□□ -1.23
SENP3Q9H4L4 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
SENP3Q9H4L4 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
SENP3Q9H4L4 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC7.37□□□□□ -1.23
SENP3Q9H4L4 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
SENP3Q9H4L4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SENP3Q9H4L4 RNA5SP387-201ENST00000364226 106 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 Y_RNA.354-201ENST00000365448 111 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 MIR515-2-201ENST00000384883 83 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 MIR515-1-201ENST00000384884 83 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 RN7SL319P-201ENST00000480656 221 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 RN7SL244P-201ENST00000493405 297 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 RNA5SP43-201ENST00000516559 110 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC7.37□□□□□ -1.23
SENP3Q9H4L4 AC006023.1-201ENST00000603944 259 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 AL391358.1-201ENST00000605342 190 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
SENP3Q9H4L4 CEP170P1-201ENST00000502249 4587 ntBASIC7.37□□□□□ -1.23
SENP3Q9H4L4 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC7.36□□□□□ -1.23
SENP3Q9H4L4 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC7.36□□□□□ -1.23
SENP3Q9H4L4 RNU6-604P-201ENST00000390917 100 ntBASIC7.36□□□□□ -1.23
SENP3Q9H4L4 RNU4-64P-201ENST00000410795 131 ntBASIC7.36□□□□□ -1.23
SENP3Q9H4L4 SCARNA20.4-201ENST00000516969 131 ntBASIC7.36□□□□□ -1.23
SENP3Q9H4L4 AC244107.2-201ENST00000611773 76 ntBASIC7.36□□□□□ -1.23
SENP3Q9H4L4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC7.36□□□□□ -1.23
SENP3Q9H4L4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC7.36□□□□□ -1.23
SENP3Q9H4L4 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC7.36□□□□□ -1.23
SENP3Q9H4L4 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC7.36□□□□□ -1.23
SENP3Q9H4L4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC7.36□□□□□ -1.23
SENP3Q9H4L4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC7.36□□□□□ -1.23
SENP3Q9H4L4 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 Y_RNA.207-201ENST00000364142 106 ntBASIC7.35□□□□□ -1.23
SENP3Q9H4L4 MIR670-201ENST00000390142 98 ntBASIC7.35□□□□□ -1.23
SENP3Q9H4L4 SRIP3-201ENST00000413200 219 ntBASIC7.35□□□□□ -1.23
SENP3Q9H4L4 STAG3L5P-204ENST00000443759 179 ntBASIC7.35□□□□□ -1.23
SENP3Q9H4L4 RN7SKP260-201ENST00000516907 149 ntBASIC7.35□□□□□ -1.23
SENP3Q9H4L4 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 MIR4715-201ENST00000584117 79 ntBASIC7.35□□□□□ -1.23
SENP3Q9H4L4 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC7.35□□□□□ -1.23
SENP3Q9H4L4 AC010733.2-201ENST00000589496 5702 ntBASIC7.34□□□□□ -1.23
SENP3Q9H4L4 AC034229.2-201ENST00000566945 2508 ntBASIC7.34□□□□□ -1.23
SENP3Q9H4L4 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC7.34□□□□□ -1.23
SENP3Q9H4L4 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC7.34□□□□□ -1.23
SENP3Q9H4L4 SNORA11.1-201ENST00000408133 129 ntBASIC7.34□□□□□ -1.23
SENP3Q9H4L4 AC091167.1-201ENST00000492017 396 ntBASIC7.34□□□□□ -1.23
SENP3Q9H4L4 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC7.34□□□□□ -1.23
SENP3Q9H4L4 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC7.34□□□□□ -1.23
SENP3Q9H4L4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC7.34□□□□□ -1.24
SENP3Q9H4L4 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC7.34□□□□□ -1.24
SENP3Q9H4L4 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SENP3Q9H4L4 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC7.33□□□□□ -1.24
SENP3Q9H4L4 MIRLET7C-201ENST00000362160 84 ntBASIC7.33□□□□□ -1.24
SENP3Q9H4L4 RNU6-940P-201ENST00000363433 104 ntBASIC7.33□□□□□ -1.24
SENP3Q9H4L4 SNORA70.4-201ENST00000365509 134 ntBASIC7.33□□□□□ -1.24
SENP3Q9H4L4 MIR607-201ENST00000385241 96 ntBASIC7.33□□□□□ -1.24
SENP3Q9H4L4 RPS27P21-201ENST00000486977 252 ntBASIC7.33□□□□□ -1.24
SENP3Q9H4L4 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SENP3Q9H4L4 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 AC004817.4-201ENST00000602396 3625 ntBASIC7.32□□□□□ -1.24
SENP3Q9H4L4 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 MIR518E-201ENST00000385252 88 ntBASIC7.32□□□□□ -1.24
SENP3Q9H4L4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC7.32□□□□□ -1.24
SENP3Q9H4L4 MIR4500-201ENST00000579472 76 ntBASIC7.32□□□□□ -1.24
SENP3Q9H4L4 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
SENP3Q9H4L4 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
SENP3Q9H4L4 RNA5SP192-201ENST00000364404 120 ntBASIC7.31□□□□□ -1.24
SENP3Q9H4L4 AC009962.1-201ENST00000567327 3813 ntBASIC7.31□□□□□ -1.24
SENP3Q9H4L4 SNORD14A-201ENST00000606526 91 ntBASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 144.7 ms