Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 AC083849.1-201ENST00000615227 514 ntBASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 AL031432.5-201ENST00000641059 760 ntBASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 AFG3L1P-217ENST00000557444 2447 ntBASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 KRT8P8-201ENST00000434750 1448 ntBASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 MOK-225ENST00000522867 1883 ntTSL 5 BASIC14.63□□□□□ -0.07
NOTCH3Q9UM47 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 PTPA-216ENST00000432651 857 ntTSL 2 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
NOTCH3Q9UM47 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 PRSS44-201ENST00000515154 1146 ntBASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 AL136038.3-201ENST00000561909 1096 ntBASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 AL353719.1-201ENST00000566847 864 ntBASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 BCL2-203ENST00000589955 5011 ntBASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
NOTCH3Q9UM47 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 MIR3180-1-201ENST00000580374 94 ntBASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 MIR3180-3-201ENST00000584616 94 ntBASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 TMEM179-206ENST00000616017 1645 ntBASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 AC138932.1-201ENST00000534164 6830 ntBASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NOTCH3Q9UM47 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms