Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 ISG20-202ENST00000379224 540 ntTSL 3 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 AC073648.6-201ENST00000641589 218 ntBASIC16.94■□□□□ 0.3
VSX1Q9NZR4 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
VSX1Q9NZR4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VSX1Q9NZR4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 AC006058.3-201ENST00000606217 1069 ntBASIC16.92■□□□□ 0.3
VSX1Q9NZR4 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VSX1Q9NZR4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 NIFKP9-201ENST00000419265 221 ntBASIC16.91■□□□□ 0.3
VSX1Q9NZR4 POU5F1P3-201ENST00000428824 1078 ntBASIC16.91■□□□□ 0.3
VSX1Q9NZR4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms