Protein–RNA interactions for Protein: Q9NYA1

SPHK1, Sphingosine kinase 1, humanhuman

Predictions only

Length 384 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPHK1Q9NYA1 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SPHK1Q9NYA1 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
SPHK1Q9NYA1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SPHK1Q9NYA1 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 KRT18P57-201ENST00000443599 1254 ntBASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SPHK1Q9NYA1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 KRT8P3-201ENST00000519669 1449 ntBASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 HMGA1P5-201ENST00000412453 271 ntBASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 AL137013.1-201ENST00000432946 1228 ntBASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SPHK1Q9NYA1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 AC073508.3-201ENST00000619697 1419 ntBASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 FAM210CP-201ENST00000445714 574 ntBASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 RN7SL850P-201ENST00000579959 291 ntBASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SPHK1Q9NYA1 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 GPAT2P1-201ENST00000444924 1672 ntBASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 AIRN-201ENST00000601203 4374 ntBASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SPHK1Q9NYA1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms