Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 AC104581.1-202ENST00000635932 2618 ntBASIC17.34■□□□□ 0.37
DDX28Q9NUL7 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.34■□□□□ 0.37
DDX28Q9NUL7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DDX28Q9NUL7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
DDX28Q9NUL7 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DDX28Q9NUL7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DDX28Q9NUL7 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
DDX28Q9NUL7 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
DDX28Q9NUL7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
DDX28Q9NUL7 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 MIPEPP3-201ENST00000412105 444 ntBASIC17.33■□□□□ 0.36
DDX28Q9NUL7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DDX28Q9NUL7 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 AC073210.2-201ENST00000430369 194 ntBASIC17.32■□□□□ 0.36
DDX28Q9NUL7 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 AC083906.2-201ENST00000511578 360 ntBASIC17.32■□□□□ 0.36
DDX28Q9NUL7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 AC092118.2-201ENST00000613495 667 ntBASIC17.32■□□□□ 0.36
DDX28Q9NUL7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
DDX28Q9NUL7 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 AC139713.2-201ENST00000641328 2723 ntBASIC17.31■□□□□ 0.36
DDX28Q9NUL7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 SLC29A4P1-201ENST00000398760 971 ntBASIC17.31■□□□□ 0.36
DDX28Q9NUL7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
DDX28Q9NUL7 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
DDX28Q9NUL7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms