Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 TSPY23P-201ENST00000440136 739 ntBASIC18.83■□□□□ 0.6
SSU72Q9NP77 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 GNAS-203ENST00000306120 1878 ntBASIC18.83■□□□□ 0.6
SSU72Q9NP77 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SSU72Q9NP77 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SSU72Q9NP77 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SSU72Q9NP77 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SSU72Q9NP77 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SSU72Q9NP77 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SSU72Q9NP77 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.83■□□□□ 0.6
SSU72Q9NP77 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
SSU72Q9NP77 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 AC087623.3-201ENST00000607047 1098 ntBASIC18.82■□□□□ 0.6
SSU72Q9NP77 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.82■□□□□ 0.6
SSU72Q9NP77 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SSU72Q9NP77 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 BX276092.2-201ENST00000417668 665 ntBASIC18.81■□□□□ 0.6
SSU72Q9NP77 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SSU72Q9NP77 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SSU72Q9NP77 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 MTMR9LP-203ENST00000426597 1545 ntBASIC18.8■□□□□ 0.6
SSU72Q9NP77 AC020763.4-201ENST00000623414 4170 ntBASIC18.8■□□□□ 0.6
SSU72Q9NP77 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.8■□□□□ 0.6
SSU72Q9NP77 AL121829.2-201ENST00000620908 328 ntBASIC18.8■□□□□ 0.6
SSU72Q9NP77 MYC-208ENST00000641036 567 ntBASIC18.8■□□□□ 0.6
SSU72Q9NP77 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SSU72Q9NP77 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms