Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 BX323043.1-201ENST00000641006 1765 ntBASIC18.96■□□□□ 0.63
TM9SF3Q9HD45 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 AP000523.1-201ENST00000398242 1049 ntBASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TM9SF3Q9HD45 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AL020996.1-203ENST00000536896 2307 ntBASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AC093458.2-201ENST00000623150 629 ntBASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AC005332.1-201ENST00000577698 1310 ntBASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AC116562.4-201ENST00000641316 2276 ntBASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AC018445.3-201ENST00000624177 1945 ntBASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
TM9SF3Q9HD45 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.93■□□□□ 0.62
TM9SF3Q9HD45 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms