Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 RARRES2P10-201ENST00000564312 460 ntBASIC19.6■□□□□ 0.73
PCDH9Q9HC56 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
PCDH9Q9HC56 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDH9Q9HC56 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDH9Q9HC56 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PCDH9Q9HC56 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 AC005082.1-201ENST00000413042 2259 ntBASIC19.57■□□□□ 0.72
PCDH9Q9HC56 AC079598.2-202ENST00000546624 1451 ntBASIC19.57■□□□□ 0.72
PCDH9Q9HC56 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 AL353807.1-201ENST00000427475 662 ntBASIC19.57■□□□□ 0.72
PCDH9Q9HC56 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDH9Q9HC56 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH9Q9HC56 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms