Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL12A1Q99715 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
COL12A1Q99715 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 YBX2P1-201ENST00000394192 760 ntBASIC16.58■□□□□ 0.24
COL12A1Q99715 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.58■□□□□ 0.24
COL12A1Q99715 METTL21AP1-201ENST00000438852 635 ntBASIC16.58■□□□□ 0.24
COL12A1Q99715 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
COL12A1Q99715 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.58■□□□□ 0.24
COL12A1Q99715 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.58■□□□□ 0.24
COL12A1Q99715 AL157888.1-201ENST00000631930 593 ntBASIC16.58■□□□□ 0.24
COL12A1Q99715 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL12A1Q99715 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC16.58■□□□□ 0.24
COL12A1Q99715 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL12A1Q99715 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
COL12A1Q99715 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.57■□□□□ 0.24
COL12A1Q99715 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.57■□□□□ 0.24
COL12A1Q99715 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.57■□□□□ 0.24
COL12A1Q99715 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 AC121338.2-201ENST00000622535 1744 ntBASIC16.57■□□□□ 0.24
COL12A1Q99715 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.57■□□□□ 0.24
COL12A1Q99715 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.57■□□□□ 0.24
COL12A1Q99715 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
COL12A1Q99715 AL591424.1-201ENST00000442569 1213 ntBASIC16.57■□□□□ 0.24
COL12A1Q99715 AC091607.1-201ENST00000490318 1060 ntBASIC16.57■□□□□ 0.24
COL12A1Q99715 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL12A1Q99715 AC104109.2-201ENST00000602919 1418 ntBASIC16.57■□□□□ 0.24
COL12A1Q99715 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL12A1Q99715 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL12A1Q99715 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL12A1Q99715 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL12A1Q99715 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.56■□□□□ 0.24
COL12A1Q99715 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.56■□□□□ 0.24
COL12A1Q99715 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.56■□□□□ 0.24
COL12A1Q99715 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
COL12A1Q99715 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.56■□□□□ 0.24
COL12A1Q99715 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.56■□□□□ 0.24
COL12A1Q99715 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
COL12A1Q99715 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.56■□□□□ 0.24
COL12A1Q99715 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 AL691432.2-201ENST00000607222 2038 ntBASIC16.56■□□□□ 0.24
COL12A1Q99715 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.56■□□□□ 0.24
COL12A1Q99715 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL12A1Q99715 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.56■□□□□ 0.24
COL12A1Q99715 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.55■□□□□ 0.24
COL12A1Q99715 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
COL12A1Q99715 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.55■□□□□ 0.24
COL12A1Q99715 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.55■□□□□ 0.24
COL12A1Q99715 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.55■□□□□ 0.24
COL12A1Q99715 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 AC092364.2-202ENST00000597012 1073 ntBASIC16.55■□□□□ 0.24
COL12A1Q99715 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL12A1Q99715 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC16.55■□□□□ 0.24
COL12A1Q99715 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.55■□□□□ 0.24
COL12A1Q99715 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.55■□□□□ 0.24
COL12A1Q99715 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL12A1Q99715 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms