Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CDX2Q99626 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
CDX2Q99626 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CDX2Q99626 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.84■□□□□ 0.77
CDX2Q99626 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CDX2Q99626 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CDX2Q99626 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDX2Q99626 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDX2Q99626 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CDX2Q99626 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDX2Q99626 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDX2Q99626 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CDX2Q99626 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDX2Q99626 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.83■□□□□ 0.77
CDX2Q99626 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.83■□□□□ 0.77
CDX2Q99626 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.83■□□□□ 0.77
CDX2Q99626 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CDX2Q99626 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.83■□□□□ 0.77
CDX2Q99626 AC010240.3-201ENST00000607688 395 ntBASIC19.83■□□□□ 0.77
CDX2Q99626 Z83851.2-201ENST00000609564 659 ntBASIC19.83■□□□□ 0.77
CDX2Q99626 AC114341.1-201ENST00000618070 349 ntBASIC19.83■□□□□ 0.77
CDX2Q99626 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.83■□□□□ 0.77
CDX2Q99626 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDX2Q99626 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.83■□□□□ 0.76
CDX2Q99626 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDX2Q99626 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDX2Q99626 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDX2Q99626 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDX2Q99626 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDX2Q99626 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CDX2Q99626 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
CDX2Q99626 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.82■□□□□ 0.76
CDX2Q99626 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.82■□□□□ 0.76
CDX2Q99626 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
CDX2Q99626 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.82■□□□□ 0.76
CDX2Q99626 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CDX2Q99626 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
CDX2Q99626 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.82■□□□□ 0.76
CDX2Q99626 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
CDX2Q99626 AC096582.2-201ENST00000510860 516 ntBASIC19.82■□□□□ 0.76
CDX2Q99626 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.82■□□□□ 0.76
CDX2Q99626 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.82■□□□□ 0.76
CDX2Q99626 MTDHP3-201ENST00000594186 672 ntBASIC19.82■□□□□ 0.76
CDX2Q99626 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.82■□□□□ 0.76
CDX2Q99626 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CDX2Q99626 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
CDX2Q99626 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CDX2Q99626 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDX2Q99626 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.81■□□□□ 0.76
CDX2Q99626 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDX2Q99626 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDX2Q99626 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDX2Q99626 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.81■□□□□ 0.76
CDX2Q99626 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDX2Q99626 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.81■□□□□ 0.76
CDX2Q99626 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.81■□□□□ 0.76
CDX2Q99626 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.81■□□□□ 0.76
CDX2Q99626 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.81■□□□□ 0.76
CDX2Q99626 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.81■□□□□ 0.76
CDX2Q99626 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CDX2Q99626 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDX2Q99626 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.81■□□□□ 0.76
CDX2Q99626 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.81■□□□□ 0.76
CDX2Q99626 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CDX2Q99626 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX2Q99626 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.8■□□□□ 0.76
CDX2Q99626 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX2Q99626 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
CDX2Q99626 SMG8-203ENST00000578922 2178 ntBASIC19.8■□□□□ 0.76
CDX2Q99626 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.8■□□□□ 0.76
CDX2Q99626 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CDX2Q99626 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.8■□□□□ 0.76
CDX2Q99626 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX2Q99626 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX2Q99626 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX2Q99626 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
CDX2Q99626 AC092910.1-201ENST00000482027 1129 ntBASIC19.8■□□□□ 0.76
CDX2Q99626 RNA5SP415-201ENST00000517246 115 ntBASIC19.8■□□□□ 0.76
CDX2Q99626 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.8■□□□□ 0.76
CDX2Q99626 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX2Q99626 PAN3-AS1-201ENST00000563843 1351 ntBASIC19.8■□□□□ 0.76
CDX2Q99626 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CDX2Q99626 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CDX2Q99626 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.79■□□□□ 0.76
CDX2Q99626 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CDX2Q99626 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms