Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.7■■□□□ 1.06
USP28Q96RU2 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
USP28Q96RU2 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.7■■□□□ 1.06
USP28Q96RU2 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP28Q96RU2 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.7■■□□□ 1.06
USP28Q96RU2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.7■■□□□ 1.06
USP28Q96RU2 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.7■■□□□ 1.06
USP28Q96RU2 AL445675.2-201ENST00000620291 557 ntBASIC21.7■■□□□ 1.06
USP28Q96RU2 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.7■■□□□ 1.06
USP28Q96RU2 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.7■■□□□ 1.06
USP28Q96RU2 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
USP28Q96RU2 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP28Q96RU2 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP28Q96RU2 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
USP28Q96RU2 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP28Q96RU2 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.7■■□□□ 1.06
USP28Q96RU2 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.7■■□□□ 1.06
USP28Q96RU2 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.7■■□□□ 1.06
USP28Q96RU2 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC21.69■■□□□ 1.06
USP28Q96RU2 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.69■■□□□ 1.06
USP28Q96RU2 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
USP28Q96RU2 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
USP28Q96RU2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
USP28Q96RU2 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.69■■□□□ 1.06
USP28Q96RU2 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.69■■□□□ 1.06
USP28Q96RU2 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.69■■□□□ 1.06
USP28Q96RU2 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.69■■□□□ 1.06
USP28Q96RU2 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.69■■□□□ 1.06
USP28Q96RU2 AC110285.5-201ENST00000611501 352 ntBASIC21.69■■□□□ 1.06
USP28Q96RU2 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.69■■□□□ 1.06
USP28Q96RU2 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 KRT8P11-201ENST00000409686 1436 ntBASIC21.69■■□□□ 1.06
USP28Q96RU2 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.69■■□□□ 1.06
USP28Q96RU2 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.69■■□□□ 1.06
USP28Q96RU2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP28Q96RU2 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.68■■□□□ 1.06
USP28Q96RU2 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
USP28Q96RU2 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 AC004980.1-204ENST00000429707 299 ntBASIC21.68■■□□□ 1.06
USP28Q96RU2 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.68■■□□□ 1.06
USP28Q96RU2 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 AC006058.3-201ENST00000606217 1069 ntBASIC21.68■■□□□ 1.06
USP28Q96RU2 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.68■■□□□ 1.06
USP28Q96RU2 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.68■■□□□ 1.06
USP28Q96RU2 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.68■■□□□ 1.06
USP28Q96RU2 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP28Q96RU2 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
USP28Q96RU2 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC21.67■■□□□ 1.06
USP28Q96RU2 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
USP28Q96RU2 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.67■■□□□ 1.06
USP28Q96RU2 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.67■■□□□ 1.06
USP28Q96RU2 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USP28Q96RU2 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.67■■□□□ 1.06
USP28Q96RU2 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.67■■□□□ 1.06
USP28Q96RU2 MIR4651-201ENST00000582622 73 ntBASIC21.67■■□□□ 1.06
USP28Q96RU2 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.67■■□□□ 1.06
USP28Q96RU2 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
USP28Q96RU2 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms