Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
CCDC140Q96MF4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 AC083906.6-201ENST00000641366 219 ntBASIC14.68□□□□□ -0.06
CCDC140Q96MF4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC140Q96MF4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 MFAP1P1-201ENST00000442257 1255 ntBASIC14.67□□□□□ -0.06
CCDC140Q96MF4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 SLC25A1P4-201ENST00000567977 778 ntBASIC14.67□□□□□ -0.06
CCDC140Q96MF4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.67□□□□□ -0.06
CCDC140Q96MF4 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC140Q96MF4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 AC097488.1-201ENST00000507834 756 ntBASIC14.66□□□□□ -0.06
CCDC140Q96MF4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 AL020996.1-203ENST00000536896 2307 ntBASIC14.66□□□□□ -0.06
CCDC140Q96MF4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC140Q96MF4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms