Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 GXYLT1P5-201ENST00000614548 1189 ntBASIC14.22□□□□□ -0.13
LINC00477Q96M19 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.22□□□□□ -0.13
LINC00477Q96M19 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
LINC00477Q96M19 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 WIZP1-201ENST00000531444 2299 ntBASIC14.21□□□□□ -0.13
LINC00477Q96M19 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 NBPF21P-201ENST00000425093 1451 ntBASIC14.21□□□□□ -0.13
LINC00477Q96M19 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
LINC00477Q96M19 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.21□□□□□ -0.13
LINC00477Q96M19 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LINC00477Q96M19 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LINC00477Q96M19 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
LINC00477Q96M19 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
LINC00477Q96M19 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC14.21□□□□□ -0.14
LINC00477Q96M19 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LINC00477Q96M19 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
LINC00477Q96M19 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
LINC00477Q96M19 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
LINC00477Q96M19 ADK-206ENST00000541550 2222 ntTSL 2 BASIC14.21□□□□□ -0.14
LINC00477Q96M19 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 THEM4-205ENST00000489410 643 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 KLF2-202ENST00000592003 564 ntTSL 3 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 GAMT-205ENST00000640762 751 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
LINC00477Q96M19 USP49-202ENST00000373010 2446 ntTSL 5 BASIC14.2□□□□□ -0.14
LINC00477Q96M19 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
LINC00477Q96M19 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
LINC00477Q96M19 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms