Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
USP43Q70EL4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.23■□□□□ 0.35
USP43Q70EL4 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
USP43Q70EL4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.23■□□□□ 0.35
USP43Q70EL4 OR6D1P-202ENST00000641007 5290 ntBASIC17.23■□□□□ 0.35
USP43Q70EL4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.23■□□□□ 0.35
USP43Q70EL4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
USP43Q70EL4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
USP43Q70EL4 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 PTBP1P-201ENST00000554374 1601 ntBASIC17.23■□□□□ 0.35
USP43Q70EL4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.23■□□□□ 0.35
USP43Q70EL4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
USP43Q70EL4 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
USP43Q70EL4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.23■□□□□ 0.35
USP43Q70EL4 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.23■□□□□ 0.35
USP43Q70EL4 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.23■□□□□ 0.35
USP43Q70EL4 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
USP43Q70EL4 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
USP43Q70EL4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
USP43Q70EL4 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.23■□□□□ 0.35
USP43Q70EL4 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
USP43Q70EL4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USP43Q70EL4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.22■□□□□ 0.35
USP43Q70EL4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
USP43Q70EL4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.22■□□□□ 0.35
USP43Q70EL4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.22■□□□□ 0.35
USP43Q70EL4 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.22■□□□□ 0.35
USP43Q70EL4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
USP43Q70EL4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.22■□□□□ 0.35
USP43Q70EL4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
USP43Q70EL4 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.22■□□□□ 0.35
USP43Q70EL4 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP43Q70EL4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
USP43Q70EL4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.21■□□□□ 0.35
USP43Q70EL4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
USP43Q70EL4 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.21■□□□□ 0.35
USP43Q70EL4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
USP43Q70EL4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.21■□□□□ 0.35
USP43Q70EL4 AC091799.1-201ENST00000422823 811 ntBASIC17.21■□□□□ 0.35
USP43Q70EL4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.21■□□□□ 0.35
USP43Q70EL4 MIR4651-201ENST00000582622 73 ntBASIC17.21■□□□□ 0.35
USP43Q70EL4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.21■□□□□ 0.35
USP43Q70EL4 AL356652.1-201ENST00000615962 565 ntBASIC17.21■□□□□ 0.35
USP43Q70EL4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.21■□□□□ 0.35
USP43Q70EL4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP43Q70EL4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
USP43Q70EL4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
USP43Q70EL4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
USP43Q70EL4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
USP43Q70EL4 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.21■□□□□ 0.34
USP43Q70EL4 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms