Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 AL391807.1-203ENST00000604392 2365 ntBASIC15.8■□□□□ 0.12
VPS13CQ709C8 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.8■□□□□ 0.12
VPS13CQ709C8 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.8■□□□□ 0.12
VPS13CQ709C8 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 AC093525.10-201ENST00000625130 1569 ntBASIC15.8■□□□□ 0.12
VPS13CQ709C8 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.8■□□□□ 0.12
VPS13CQ709C8 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VPS13CQ709C8 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 AL353801.3-201ENST00000609898 542 ntBASIC15.79■□□□□ 0.12
VPS13CQ709C8 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VPS13CQ709C8 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 AC079776.4-201ENST00000511039 504 ntBASIC15.79■□□□□ 0.12
VPS13CQ709C8 AC117500.6-201ENST00000624871 588 ntBASIC15.79■□□□□ 0.12
VPS13CQ709C8 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
VPS13CQ709C8 AC099778.1-201ENST00000568593 1911 ntBASIC15.78■□□□□ 0.12
VPS13CQ709C8 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.78■□□□□ 0.12
VPS13CQ709C8 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC15.78■□□□□ 0.12
VPS13CQ709C8 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VPS13CQ709C8 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13CQ709C8 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13CQ709C8 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VPS13CQ709C8 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms