Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AL645929.1-201ENST00000420084 975 ntBASIC16.3■□□□□ 0.2
ABCA4P78363 FAAHP1-202ENST00000446499 1238 ntBASIC16.3■□□□□ 0.2
ABCA4P78363 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.3■□□□□ 0.2
ABCA4P78363 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.3■□□□□ 0.2
ABCA4P78363 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.3■□□□□ 0.2
ABCA4P78363 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.3■□□□□ 0.2
ABCA4P78363 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 AL121672.3-201ENST00000608644 468 ntBASIC16.3■□□□□ 0.2
ABCA4P78363 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.3■□□□□ 0.2
ABCA4P78363 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ABCA4P78363 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ABCA4P78363 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
ABCA4P78363 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 AL845331.1-201ENST00000424978 1190 ntBASIC16.3■□□□□ 0.2
ABCA4P78363 MIR4674-201ENST00000582457 87 ntBASIC16.3■□□□□ 0.2
ABCA4P78363 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.3■□□□□ 0.2
ABCA4P78363 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.3■□□□□ 0.2
ABCA4P78363 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ABCA4P78363 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
ABCA4P78363 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.29■□□□□ 0.2
ABCA4P78363 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
ABCA4P78363 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
ABCA4P78363 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
ABCA4P78363 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.29■□□□□ 0.2
ABCA4P78363 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.29■□□□□ 0.2
ABCA4P78363 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 AC004870.1-201ENST00000315132 882 ntBASIC16.29■□□□□ 0.2
ABCA4P78363 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
ABCA4P78363 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.29■□□□□ 0.2
ABCA4P78363 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.29■□□□□ 0.2
ABCA4P78363 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.29■□□□□ 0.2
ABCA4P78363 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ABCA4P78363 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
ABCA4P78363 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCA4P78363 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ABCA4P78363 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCA4P78363 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
ABCA4P78363 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ABCA4P78363 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ABCA4P78363 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCA4P78363 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCA4P78363 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ABCA4P78363 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCA4P78363 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.28■□□□□ 0.2
ABCA4P78363 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
ABCA4P78363 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCA4P78363 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.28■□□□□ 0.2
ABCA4P78363 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ABCA4P78363 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCA4P78363 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCA4P78363 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ABCA4P78363 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCA4P78363 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCA4P78363 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC16.27■□□□□ 0.2
ABCA4P78363 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ABCA4P78363 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms