Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 ZNF815P-204ENST00000434898 1737 ntBASIC17.12■□□□□ 0.33
LSM3P62310 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.12■□□□□ 0.33
LSM3P62310 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.12■□□□□ 0.33
LSM3P62310 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LSM3P62310 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.11■□□□□ 0.33
LSM3P62310 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.11■□□□□ 0.33
LSM3P62310 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LSM3P62310 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.11■□□□□ 0.33
LSM3P62310 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LSM3P62310 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
LSM3P62310 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.11■□□□□ 0.33
LSM3P62310 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.11■□□□□ 0.33
LSM3P62310 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
LSM3P62310 AP001160.3-201ENST00000601484 763 ntBASIC17.11■□□□□ 0.33
LSM3P62310 AC104187.1-201ENST00000607510 612 ntBASIC17.11■□□□□ 0.33
LSM3P62310 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LSM3P62310 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LSM3P62310 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.1■□□□□ 0.33
LSM3P62310 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LSM3P62310 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.1■□□□□ 0.33
LSM3P62310 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 GUSBP5-201ENST00000418136 578 ntBASIC17.1■□□□□ 0.33
LSM3P62310 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.1■□□□□ 0.33
LSM3P62310 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.1■□□□□ 0.33
LSM3P62310 AC131281.2-201ENST00000520478 145 ntBASIC17.1■□□□□ 0.33
LSM3P62310 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.1■□□□□ 0.33
LSM3P62310 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.1■□□□□ 0.33
LSM3P62310 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
LSM3P62310 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LSM3P62310 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.1■□□□□ 0.33
LSM3P62310 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 CYP21A1P-202ENST00000354927 1481 ntBASIC17.1■□□□□ 0.33
LSM3P62310 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
LSM3P62310 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.1■□□□□ 0.33
LSM3P62310 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.1■□□□□ 0.33
LSM3P62310 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LSM3P62310 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LSM3P62310 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.1■□□□□ 0.33
LSM3P62310 CROCCP1-201ENST00000426910 5675 ntBASIC17.1■□□□□ 0.33
LSM3P62310 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LSM3P62310 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.09■□□□□ 0.33
LSM3P62310 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.09■□□□□ 0.33
LSM3P62310 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LSM3P62310 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LSM3P62310 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LSM3P62310 CCDC92B-201ENST00000575506 885 ntBASIC17.09■□□□□ 0.33
LSM3P62310 AL136162.1-201ENST00000607711 1078 ntBASIC17.09■□□□□ 0.33
LSM3P62310 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.09■□□□□ 0.33
LSM3P62310 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LSM3P62310 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
LSM3P62310 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
LSM3P62310 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.09■□□□□ 0.33
LSM3P62310 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.09■□□□□ 0.33
LSM3P62310 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LSM3P62310 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LSM3P62310 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms