Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A4P53420 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL4A4P53420 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL4A4P53420 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
COL4A4P53420 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL4A4P53420 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.31■□□□□ 0.84
COL4A4P53420 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
COL4A4P53420 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 AC106795.1-205ENST00000512851 1056 ntBASIC20.31■□□□□ 0.84
COL4A4P53420 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
COL4A4P53420 KRT8P26-201ENST00000534154 1276 ntBASIC20.31■□□□□ 0.84
COL4A4P53420 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.31■□□□□ 0.84
COL4A4P53420 AL160237.2-201ENST00000556165 472 ntBASIC20.31■□□□□ 0.84
COL4A4P53420 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.31■□□□□ 0.84
COL4A4P53420 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.31■□□□□ 0.84
COL4A4P53420 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
COL4A4P53420 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.31■□□□□ 0.84
COL4A4P53420 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.31■□□□□ 0.84
COL4A4P53420 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A4P53420 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
COL4A4P53420 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
COL4A4P53420 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A4P53420 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
COL4A4P53420 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
COL4A4P53420 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.3■□□□□ 0.84
COL4A4P53420 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A4P53420 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A4P53420 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A4P53420 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.3■□□□□ 0.84
COL4A4P53420 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
COL4A4P53420 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 AL162741.1-201ENST00000565563 1558 ntBASIC20.3■□□□□ 0.84
COL4A4P53420 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.3■□□□□ 0.84
COL4A4P53420 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL4A4P53420 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL4A4P53420 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A4P53420 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.29■□□□□ 0.84
COL4A4P53420 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.29■□□□□ 0.84
COL4A4P53420 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A4P53420 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.29■□□□□ 0.84
COL4A4P53420 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL4A4P53420 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.29■□□□□ 0.84
COL4A4P53420 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.29■□□□□ 0.84
COL4A4P53420 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.29■□□□□ 0.84
COL4A4P53420 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 AC138894.3-201ENST00000603787 634 ntBASIC20.29■□□□□ 0.84
COL4A4P53420 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.29■□□□□ 0.84
COL4A4P53420 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.29■□□□□ 0.84
COL4A4P53420 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A4P53420 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.29■□□□□ 0.84
COL4A4P53420 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL4A4P53420 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.28■□□□□ 0.84
COL4A4P53420 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL4A4P53420 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.28■□□□□ 0.84
COL4A4P53420 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms