Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 KRT16P6-202ENST00000425692 1426 ntBASIC19.88■□□□□ 0.77
LIG3P49916 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
LIG3P49916 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.88■□□□□ 0.77
LIG3P49916 AC133681.1-201ENST00000465482 601 ntBASIC19.88■□□□□ 0.77
LIG3P49916 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.88■□□□□ 0.77
LIG3P49916 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.88■□□□□ 0.77
LIG3P49916 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.88■□□□□ 0.77
LIG3P49916 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.88■□□□□ 0.77
LIG3P49916 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.88■□□□□ 0.77
LIG3P49916 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
LIG3P49916 AL121906.2-201ENST00000621597 723 ntBASIC19.88■□□□□ 0.77
LIG3P49916 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
LIG3P49916 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIG3P49916 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
LIG3P49916 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.87■□□□□ 0.77
LIG3P49916 AC068880.1-201ENST00000507289 2297 ntBASIC19.87■□□□□ 0.77
LIG3P49916 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
LIG3P49916 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
LIG3P49916 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.87■□□□□ 0.77
LIG3P49916 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.87■□□□□ 0.77
LIG3P49916 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.87■□□□□ 0.77
LIG3P49916 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.87■□□□□ 0.77
LIG3P49916 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.87■□□□□ 0.77
LIG3P49916 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.87■□□□□ 0.77
LIG3P49916 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.87■□□□□ 0.77
LIG3P49916 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.87■□□□□ 0.77
LIG3P49916 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
LIG3P49916 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.87■□□□□ 0.77
LIG3P49916 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 TMEM179-206ENST00000616017 1645 ntBASIC19.87■□□□□ 0.77
LIG3P49916 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIG3P49916 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LIG3P49916 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LIG3P49916 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.86■□□□□ 0.77
LIG3P49916 NOC2LP2-201ENST00000407594 1944 ntBASIC19.86■□□□□ 0.77
LIG3P49916 CROCCP3-202ENST00000420820 1947 ntBASIC19.86■□□□□ 0.77
LIG3P49916 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.86■□□□□ 0.77
LIG3P49916 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
LIG3P49916 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.86■□□□□ 0.77
LIG3P49916 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.86■□□□□ 0.77
LIG3P49916 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
LIG3P49916 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
LIG3P49916 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.86■□□□□ 0.77
LIG3P49916 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.86■□□□□ 0.77
LIG3P49916 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
LIG3P49916 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.86■□□□□ 0.77
LIG3P49916 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.86■□□□□ 0.77
LIG3P49916 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.86■□□□□ 0.77
LIG3P49916 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIG3P49916 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
LIG3P49916 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIG3P49916 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIG3P49916 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.85■□□□□ 0.77
LIG3P49916 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
LIG3P49916 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIG3P49916 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIG3P49916 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.85■□□□□ 0.77
LIG3P49916 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
LIG3P49916 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.85■□□□□ 0.77
LIG3P49916 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.85■□□□□ 0.77
LIG3P49916 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms