Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CIITAP33076 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.36■■□□□ 1.01
CIITAP33076 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.36■■□□□ 1.01
CIITAP33076 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CIITAP33076 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CIITAP33076 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CIITAP33076 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.36■■□□□ 1.01
CIITAP33076 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.36■■□□□ 1.01
CIITAP33076 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC21.35■■□□□ 1.01
CIITAP33076 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CIITAP33076 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 AL109659.2-201ENST00000606809 1674 ntBASIC21.35■■□□□ 1.01
CIITAP33076 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.35■■□□□ 1.01
CIITAP33076 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
CIITAP33076 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.35■■□□□ 1.01
CIITAP33076 RN7SL850P-201ENST00000579959 291 ntBASIC21.35■■□□□ 1.01
CIITAP33076 CR769767.2-201ENST00000622735 460 ntBASIC21.35■■□□□ 1.01
CIITAP33076 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
CIITAP33076 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
CIITAP33076 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CIITAP33076 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
CIITAP33076 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CIITAP33076 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
CIITAP33076 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.34■■□□□ 1.01
CIITAP33076 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CIITAP33076 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.34■■□□□ 1.01
CIITAP33076 LIN28AP1-201ENST00000429574 405 ntBASIC21.34■■□□□ 1.01
CIITAP33076 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.34■■□□□ 1.01
CIITAP33076 AC068587.9-201ENST00000641814 219 ntBASIC21.34■■□□□ 1.01
CIITAP33076 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
CIITAP33076 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.34■■□□□ 1.01
CIITAP33076 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.34■■□□□ 1.01
CIITAP33076 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
CIITAP33076 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.34■■□□□ 1.01
CIITAP33076 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
CIITAP33076 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CIITAP33076 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.33■■□□□ 1.01
CIITAP33076 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CIITAP33076 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.33■■□□□ 1.01
CIITAP33076 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CIITAP33076 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CIITAP33076 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CIITAP33076 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CIITAP33076 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.33■■□□□ 1.01
CIITAP33076 KRT18P57-201ENST00000443599 1254 ntBASIC21.33■■□□□ 1.01
CIITAP33076 MCCD1P1-208ENST00000445732 328 ntBASIC21.33■■□□□ 1.01
CIITAP33076 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
CIITAP33076 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CIITAP33076 KRT18P21-201ENST00000515767 1272 ntBASIC21.33■■□□□ 1.01
CIITAP33076 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.33■■□□□ 1.01
CIITAP33076 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.33■■□□□ 1.01
CIITAP33076 AC141257.4-201ENST00000634557 245 ntBASIC21.33■■□□□ 1.01
CIITAP33076 AC136944.6-201ENST00000634818 245 ntBASIC21.33■■□□□ 1.01
CIITAP33076 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CIITAP33076 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
CIITAP33076 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.33■■□□□ 1
CIITAP33076 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.33■■□□□ 1
CIITAP33076 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
CIITAP33076 RCC2P3-201ENST00000418112 1537 ntBASIC21.33■■□□□ 1
CIITAP33076 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
CIITAP33076 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CIITAP33076 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.33■■□□□ 1
CIITAP33076 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CIITAP33076 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CIITAP33076 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.32■■□□□ 1
CIITAP33076 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CIITAP33076 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.32■■□□□ 1
CIITAP33076 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
CIITAP33076 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms