Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 AC007967.2-201ENST00000432613 625 ntBASIC19.81■□□□□ 0.76
COL6A3P12111 FGFR3P6-201ENST00000457012 610 ntBASIC19.81■□□□□ 0.76
COL6A3P12111 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.81■□□□□ 0.76
COL6A3P12111 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A3P12111 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.81■□□□□ 0.76
COL6A3P12111 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A3P12111 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A3P12111 AC093028.1-201ENST00000622998 982 ntBASIC19.8■□□□□ 0.76
COL6A3P12111 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A3P12111 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A3P12111 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A3P12111 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A3P12111 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
COL6A3P12111 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A3P12111 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A3P12111 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.8■□□□□ 0.76
COL6A3P12111 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.8■□□□□ 0.76
COL6A3P12111 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A3P12111 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A3P12111 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.8■□□□□ 0.76
COL6A3P12111 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A3P12111 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A3P12111 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A3P12111 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A3P12111 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A3P12111 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A3P12111 KRT18P23-201ENST00000435622 1283 ntBASIC19.79■□□□□ 0.76
COL6A3P12111 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A3P12111 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A3P12111 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A3P12111 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 MIR5100-201ENST00000579544 119 ntBASIC19.79■□□□□ 0.76
COL6A3P12111 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.79■□□□□ 0.76
COL6A3P12111 Z92544.3-201ENST00000624747 417 ntBASIC19.79■□□□□ 0.76
COL6A3P12111 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
COL6A3P12111 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A3P12111 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A3P12111 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.79■□□□□ 0.76
COL6A3P12111 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A3P12111 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A3P12111 AC093512.1-201ENST00000617969 520 ntBASIC19.79■□□□□ 0.76
COL6A3P12111 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A3P12111 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A3P12111 AC092474.2-201ENST00000424288 719 ntBASIC19.78■□□□□ 0.76
COL6A3P12111 ALG1L5P-201ENST00000482043 771 ntBASIC19.78■□□□□ 0.76
COL6A3P12111 SNHG9-202ENST00000564014 471 ntBASIC19.78■□□□□ 0.76
COL6A3P12111 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A3P12111 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A3P12111 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A3P12111 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A3P12111 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL6A3P12111 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A3P12111 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A3P12111 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.78■□□□□ 0.76
COL6A3P12111 AL591684.3-201ENST00000605187 298 ntBASIC19.78■□□□□ 0.76
COL6A3P12111 AC027612.4-201ENST00000605371 583 ntBASIC19.78■□□□□ 0.76
COL6A3P12111 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.78■□□□□ 0.76
COL6A3P12111 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A3P12111 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 AL024507.2-201ENST00000606070 2574 ntBASIC19.77■□□□□ 0.76
COL6A3P12111 AC254562.1-201ENST00000417586 456 ntBASIC19.77■□□□□ 0.76
COL6A3P12111 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
COL6A3P12111 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.77■□□□□ 0.76
COL6A3P12111 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.77■□□□□ 0.76
COL6A3P12111 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 IGHV3-41-201ENST00000613121 348 ntBASIC19.77■□□□□ 0.76
COL6A3P12111 AC124864.1-201ENST00000623408 392 ntBASIC19.77■□□□□ 0.76
COL6A3P12111 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
COL6A3P12111 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 AC015922.1-201ENST00000421102 1152 ntBASIC19.77■□□□□ 0.76
COL6A3P12111 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC19.77■□□□□ 0.76
COL6A3P12111 VENTXP7-201ENST00000475503 772 ntBASIC19.77■□□□□ 0.76
COL6A3P12111 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.77■□□□□ 0.76
COL6A3P12111 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
COL6A3P12111 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
COL6A3P12111 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.77■□□□□ 0.76
COL6A3P12111 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL6A3P12111 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
COL6A3P12111 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
COL6A3P12111 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms