Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCNAP12004 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCNAP12004 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
PCNAP12004 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCNAP12004 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCNAP12004 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PCNAP12004 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.47■□□□□ 0.55
PCNAP12004 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PCNAP12004 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PCNAP12004 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.47■□□□□ 0.55
PCNAP12004 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
PCNAP12004 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PCNAP12004 AL049812.1-201ENST00000432563 2267 ntBASIC18.47■□□□□ 0.55
PCNAP12004 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.47■□□□□ 0.55
PCNAP12004 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.47■□□□□ 0.55
PCNAP12004 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 RPPH1-201ENST00000516869 333 ntBASIC18.47■□□□□ 0.55
PCNAP12004 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.47■□□□□ 0.55
PCNAP12004 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.47■□□□□ 0.55
PCNAP12004 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.47■□□□□ 0.55
PCNAP12004 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.47■□□□□ 0.55
PCNAP12004 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.47■□□□□ 0.55
PCNAP12004 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PCNAP12004 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PCNAP12004 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCNAP12004 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.46■□□□□ 0.55
PCNAP12004 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.46■□□□□ 0.55
PCNAP12004 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.46■□□□□ 0.55
PCNAP12004 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
PCNAP12004 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.46■□□□□ 0.55
PCNAP12004 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PCNAP12004 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.46■□□□□ 0.55
PCNAP12004 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.46■□□□□ 0.55
PCNAP12004 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.46■□□□□ 0.55
PCNAP12004 ITM2C-210ENST00000620962 501 ntBASIC18.46■□□□□ 0.55
PCNAP12004 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
PCNAP12004 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.46■□□□□ 0.55
PCNAP12004 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.46■□□□□ 0.55
PCNAP12004 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCNAP12004 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PCNAP12004 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.54
PCNAP12004 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.46■□□□□ 0.54
PCNAP12004 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.45■□□□□ 0.54
PCNAP12004 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.45■□□□□ 0.54
PCNAP12004 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.45■□□□□ 0.54
PCNAP12004 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.45■□□□□ 0.54
PCNAP12004 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
PCNAP12004 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.45■□□□□ 0.54
PCNAP12004 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PCNAP12004 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PCNAP12004 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.45■□□□□ 0.54
PCNAP12004 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 HTR7P1-201ENST00000538670 1336 ntBASIC18.45■□□□□ 0.54
PCNAP12004 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
PCNAP12004 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCNAP12004 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PCNAP12004 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.44■□□□□ 0.54
PCNAP12004 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.44■□□□□ 0.54
PCNAP12004 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.44■□□□□ 0.54
PCNAP12004 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PCNAP12004 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms