Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.06■□□□□ 0.64
VIMP08670 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
VIMP08670 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
VIMP08670 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.06■□□□□ 0.64
VIMP08670 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VIMP08670 LINC02228-203ENST00000641970 1355 ntBASIC19.06■□□□□ 0.64
VIMP08670 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.05■□□□□ 0.64
VIMP08670 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
VIMP08670 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.05■□□□□ 0.64
VIMP08670 AC099398.1-201ENST00000567919 2776 ntBASIC19.05■□□□□ 0.64
VIMP08670 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.05■□□□□ 0.64
VIMP08670 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.05■□□□□ 0.64
VIMP08670 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
VIMP08670 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 TERF1P2-201ENST00000583350 1212 ntBASIC19.05■□□□□ 0.64
VIMP08670 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.05■□□□□ 0.64
VIMP08670 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.05■□□□□ 0.64
VIMP08670 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
VIMP08670 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VIMP08670 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.05■□□□□ 0.64
VIMP08670 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.04■□□□□ 0.64
VIMP08670 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.04■□□□□ 0.64
VIMP08670 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.04■□□□□ 0.64
VIMP08670 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VIMP08670 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.04■□□□□ 0.64
VIMP08670 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
VIMP08670 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.04■□□□□ 0.64
VIMP08670 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VIMP08670 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.04■□□□□ 0.64
VIMP08670 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VIMP08670 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.04■□□□□ 0.64
VIMP08670 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VIMP08670 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.03■□□□□ 0.64
VIMP08670 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.03■□□□□ 0.64
VIMP08670 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.03■□□□□ 0.64
VIMP08670 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VIMP08670 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
VIMP08670 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.03■□□□□ 0.64
VIMP08670 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.03■□□□□ 0.64
VIMP08670 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
VIMP08670 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.03■□□□□ 0.64
VIMP08670 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VIMP08670 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VIMP08670 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.03■□□□□ 0.64
VIMP08670 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
VIMP08670 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VIMP08670 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VIMP08670 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.02■□□□□ 0.64
VIMP08670 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.02■□□□□ 0.64
VIMP08670 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VIMP08670 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VIMP08670 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
VIMP08670 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.02■□□□□ 0.64
VIMP08670 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.02■□□□□ 0.64
VIMP08670 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC19.02■□□□□ 0.64
VIMP08670 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC19.02■□□□□ 0.64
VIMP08670 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
VIMP08670 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VIMP08670 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VIMP08670 MCRIP2P1-201ENST00000394346 511 ntBASIC19.02■□□□□ 0.64
VIMP08670 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms