Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MMP3P08254 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
MMP3P08254 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21■□□□□ 0.95
MMP3P08254 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21■□□□□ 0.95
MMP3P08254 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
MMP3P08254 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21■□□□□ 0.95
MMP3P08254 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21■□□□□ 0.95
MMP3P08254 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21■□□□□ 0.95
MMP3P08254 AC011498.5-201ENST00000592027 486 ntBASIC21■□□□□ 0.95
MMP3P08254 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21■□□□□ 0.95
MMP3P08254 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
MMP3P08254 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
MMP3P08254 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 RCC2P3-201ENST00000418112 1537 ntBASIC20.99■□□□□ 0.95
MMP3P08254 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
MMP3P08254 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.99■□□□□ 0.95
MMP3P08254 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.99■□□□□ 0.95
MMP3P08254 MIR3917-201ENST00000580971 93 ntBASIC20.99■□□□□ 0.95
MMP3P08254 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.99■□□□□ 0.95
MMP3P08254 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.99■□□□□ 0.95
MMP3P08254 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 AL512353.2-201ENST00000448759 1962 ntBASIC20.99■□□□□ 0.95
MMP3P08254 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 AL109659.2-201ENST00000606809 1674 ntBASIC20.99■□□□□ 0.95
MMP3P08254 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
MMP3P08254 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MMP3P08254 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.99■□□□□ 0.95
MMP3P08254 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
MMP3P08254 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
MMP3P08254 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
MMP3P08254 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 HLA-F-220ENST00000434407 884 ntBASIC20.98■□□□□ 0.95
MMP3P08254 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.98■□□□□ 0.95
MMP3P08254 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.98■□□□□ 0.95
MMP3P08254 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.98■□□□□ 0.95
MMP3P08254 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
MMP3P08254 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.98■□□□□ 0.95
MMP3P08254 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
MMP3P08254 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MMP3P08254 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
MMP3P08254 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
MMP3P08254 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MMP3P08254 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.97■□□□□ 0.95
MMP3P08254 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
MMP3P08254 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.97■□□□□ 0.95
MMP3P08254 AC008556.1-201ENST00000610908 2040 ntBASIC20.97■□□□□ 0.95
MMP3P08254 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.97■□□□□ 0.95
MMP3P08254 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.97■□□□□ 0.95
MMP3P08254 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MMP3P08254 TSSC2-201ENST00000450217 709 ntBASIC20.97■□□□□ 0.95
MMP3P08254 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.97■□□□□ 0.95
MMP3P08254 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.97■□□□□ 0.95
MMP3P08254 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
MMP3P08254 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MMP3P08254 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.97■□□□□ 0.95
MMP3P08254 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.97■□□□□ 0.95
MMP3P08254 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MMP3P08254 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.97■□□□□ 0.95
MMP3P08254 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MMP3P08254 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.97■□□□□ 0.95
MMP3P08254 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.97■□□□□ 0.95
MMP3P08254 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.97■□□□□ 0.95
MMP3P08254 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MMP3P08254 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
MMP3P08254 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MMP3P08254 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.97■□□□□ 0.95
MMP3P08254 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MMP3P08254 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
MMP3P08254 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.96■□□□□ 0.95
MMP3P08254 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MMP3P08254 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MMP3P08254 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MMP3P08254 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MMP3P08254 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms