Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 LINC01521-201ENST00000504184 1943 ntBASIC20.64■□□□□ 0.89
CHRNA1P02708 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA1P02708 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA1P02708 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA1P02708 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA1P02708 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.64■□□□□ 0.89
CHRNA1P02708 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CHRNA1P02708 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.63■□□□□ 0.89
CHRNA1P02708 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.63■□□□□ 0.89
CHRNA1P02708 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CHRNA1P02708 AC016734.2-201ENST00000624325 1377 ntBASIC20.63■□□□□ 0.89
CHRNA1P02708 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
CHRNA1P02708 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.63■□□□□ 0.89
CHRNA1P02708 TPM4P1-201ENST00000436100 807 ntBASIC20.63■□□□□ 0.89
CHRNA1P02708 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.63■□□□□ 0.89
CHRNA1P02708 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.63■□□□□ 0.89
CHRNA1P02708 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.63■□□□□ 0.89
CHRNA1P02708 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.63■□□□□ 0.89
CHRNA1P02708 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.63■□□□□ 0.89
CHRNA1P02708 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.63■□□□□ 0.89
CHRNA1P02708 AC112497.1-201ENST00000624824 639 ntBASIC20.63■□□□□ 0.89
CHRNA1P02708 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CHRNA1P02708 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CHRNA1P02708 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA1P02708 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA1P02708 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CHRNA1P02708 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA1P02708 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CHRNA1P02708 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
CHRNA1P02708 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.62■□□□□ 0.89
CHRNA1P02708 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
CHRNA1P02708 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.62■□□□□ 0.89
CHRNA1P02708 HLA-F-220ENST00000434407 884 ntBASIC20.62■□□□□ 0.89
CHRNA1P02708 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.62■□□□□ 0.89
CHRNA1P02708 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.62■□□□□ 0.89
CHRNA1P02708 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA1P02708 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.62■□□□□ 0.89
CHRNA1P02708 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.62■□□□□ 0.89
CHRNA1P02708 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA1P02708 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA1P02708 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA1P02708 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CHRNA1P02708 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
CHRNA1P02708 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.62■□□□□ 0.89
CHRNA1P02708 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CHRNA1P02708 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHRNA1P02708 AC026396.1-201ENST00000419388 421 ntBASIC20.61■□□□□ 0.89
CHRNA1P02708 TSSC2-201ENST00000450217 709 ntBASIC20.61■□□□□ 0.89
CHRNA1P02708 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.61■□□□□ 0.89
CHRNA1P02708 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
CHRNA1P02708 PP7080-204ENST00000510714 601 ntTSL 3 BASIC20.61■□□□□ 0.89
CHRNA1P02708 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.61■□□□□ 0.89
CHRNA1P02708 MIR3180-1-201ENST00000580374 94 ntBASIC20.61■□□□□ 0.89
CHRNA1P02708 MIR3180-3-201ENST00000584616 94 ntBASIC20.61■□□□□ 0.89
CHRNA1P02708 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.61■□□□□ 0.89
CHRNA1P02708 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CHRNA1P02708 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CHRNA1P02708 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CHRNA1P02708 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CHRNA1P02708 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.6■□□□□ 0.89
CHRNA1P02708 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 AL162741.1-201ENST00000565563 1558 ntBASIC20.6■□□□□ 0.89
CHRNA1P02708 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CHRNA1P02708 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CHRNA1P02708 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC20.6■□□□□ 0.89
CHRNA1P02708 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.6■□□□□ 0.89
CHRNA1P02708 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
CHRNA1P02708 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.6■□□□□ 0.89
CHRNA1P02708 MIR3917-201ENST00000580971 93 ntBASIC20.6■□□□□ 0.89
CHRNA1P02708 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.6■□□□□ 0.89
CHRNA1P02708 AC092329.2-201ENST00000598402 547 ntBASIC20.6■□□□□ 0.89
CHRNA1P02708 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CHRNA1P02708 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CHRNA1P02708 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms