Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC23.24■■□□□ 1.31
COL4A1P02462 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23.24■■□□□ 1.31
COL4A1P02462 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.23■■□□□ 1.31
COL4A1P02462 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC23.23■■□□□ 1.31
COL4A1P02462 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.23■■□□□ 1.31
COL4A1P02462 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC23.23■■□□□ 1.31
COL4A1P02462 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL4A1P02462 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL4A1P02462 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL4A1P02462 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL4A1P02462 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL4A1P02462 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC23.23■■□□□ 1.31
COL4A1P02462 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL4A1P02462 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
COL4A1P02462 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
COL4A1P02462 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
COL4A1P02462 POLI-202ENST00000406285 2030 ntTSL 2 BASIC23.23■■□□□ 1.31
COL4A1P02462 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC23.22■■□□□ 1.31
COL4A1P02462 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC23.22■■□□□ 1.31
COL4A1P02462 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL4A1P02462 PPIH-202ENST00000372549 327 ntTSL 3 BASIC23.22■■□□□ 1.31
COL4A1P02462 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
COL4A1P02462 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC23.22■■□□□ 1.31
COL4A1P02462 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC23.22■■□□□ 1.31
COL4A1P02462 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC23.22■■□□□ 1.31
COL4A1P02462 MIR3917-201ENST00000580971 93 ntBASIC23.22■■□□□ 1.31
COL4A1P02462 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC23.22■■□□□ 1.31
COL4A1P02462 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
COL4A1P02462 AL391807.1-203ENST00000604392 2365 ntBASIC23.22■■□□□ 1.31
COL4A1P02462 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC23.22■■□□□ 1.31
COL4A1P02462 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC23.22■■□□□ 1.31
COL4A1P02462 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC23.22■■□□□ 1.31
COL4A1P02462 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL4A1P02462 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
COL4A1P02462 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC23.22■■□□□ 1.31
COL4A1P02462 AC034232.1-201ENST00000506026 1064 ntBASIC23.22■■□□□ 1.31
COL4A1P02462 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL4A1P02462 TPSP2-201ENST00000561760 610 ntBASIC23.22■■□□□ 1.31
COL4A1P02462 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC23.22■■□□□ 1.31
COL4A1P02462 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
COL4A1P02462 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL4A1P02462 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
COL4A1P02462 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
COL4A1P02462 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
COL4A1P02462 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A1P02462 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 TPM4P1-201ENST00000436100 807 ntBASIC23.21■■□□□ 1.31
COL4A1P02462 UNC93B7-201ENST00000509439 705 ntBASIC23.21■■□□□ 1.31
COL4A1P02462 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC23.21■■□□□ 1.31
COL4A1P02462 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
COL4A1P02462 PRR29-207ENST00000580752 458 ntTSL 3 BASIC23.21■■□□□ 1.31
COL4A1P02462 AL136038.4-201ENST00000603606 1261 ntBASIC23.21■■□□□ 1.31
COL4A1P02462 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
COL4A1P02462 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
COL4A1P02462 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A1P02462 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC23.21■■□□□ 1.31
COL4A1P02462 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL4A1P02462 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
COL4A1P02462 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.31
COL4A1P02462 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC23.2■■□□□ 1.31
COL4A1P02462 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC23.2■■□□□ 1.3
COL4A1P02462 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 ENSA-205ENST00000361532 792 ntTSL 2 BASIC23.2■■□□□ 1.3
COL4A1P02462 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC23.2■■□□□ 1.3
COL4A1P02462 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC23.2■■□□□ 1.3
COL4A1P02462 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC23.2■■□□□ 1.3
COL4A1P02462 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC23.2■■□□□ 1.3
COL4A1P02462 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC23.2■■□□□ 1.3
COL4A1P02462 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 AL512353.2-201ENST00000448759 1962 ntBASIC23.2■■□□□ 1.3
COL4A1P02462 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC23.2■■□□□ 1.3
COL4A1P02462 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL4A1P02462 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.19■■□□□ 1.3
COL4A1P02462 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms