Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.31■□□□□ 0.52
LDLRP01130 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 AC006333.2-201ENST00000607957 2099 ntBASIC18.31■□□□□ 0.52
LDLRP01130 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LDLRP01130 ARMC10P1-201ENST00000313754 855 ntBASIC18.31■□□□□ 0.52
LDLRP01130 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 AC239809.2-201ENST00000415381 517 ntBASIC18.31■□□□□ 0.52
LDLRP01130 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.31■□□□□ 0.52
LDLRP01130 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.31■□□□□ 0.52
LDLRP01130 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.31■□□□□ 0.52
LDLRP01130 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.31■□□□□ 0.52
LDLRP01130 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 AL031963.3-201ENST00000606441 850 ntBASIC18.31■□□□□ 0.52
LDLRP01130 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.31■□□□□ 0.52
LDLRP01130 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.31■□□□□ 0.52
LDLRP01130 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 AC135050.7-201ENST00000624508 2218 ntBASIC18.31■□□□□ 0.52
LDLRP01130 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDLRP01130 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LDLRP01130 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.3■□□□□ 0.52
LDLRP01130 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LDLRP01130 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.3■□□□□ 0.52
LDLRP01130 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
LDLRP01130 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.3■□□□□ 0.52
LDLRP01130 RN7SL850P-201ENST00000579959 291 ntBASIC18.3■□□□□ 0.52
LDLRP01130 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
LDLRP01130 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.3■□□□□ 0.52
LDLRP01130 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
LDLRP01130 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.3■□□□□ 0.52
LDLRP01130 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
LDLRP01130 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.3■□□□□ 0.52
LDLRP01130 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDLRP01130 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 BCL2-203ENST00000589955 5011 ntBASIC18.29■□□□□ 0.52
LDLRP01130 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.29■□□□□ 0.52
LDLRP01130 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
LDLRP01130 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.29■□□□□ 0.52
LDLRP01130 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.29■□□□□ 0.52
LDLRP01130 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.29■□□□□ 0.52
LDLRP01130 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.29■□□□□ 0.52
LDLRP01130 AC110285.5-201ENST00000611501 352 ntBASIC18.29■□□□□ 0.52
LDLRP01130 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.29■□□□□ 0.52
LDLRP01130 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.29■□□□□ 0.52
LDLRP01130 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LDLRP01130 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LDLRP01130 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms