Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 AC007322.1-201ENST00000426983 750 ntBASIC17.88■□□□□ 0.45
CLPTM1O96005 CNN2P6-201ENST00000439038 900 ntBASIC17.88■□□□□ 0.45
CLPTM1O96005 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC17.88■□□□□ 0.45
CLPTM1O96005 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.88■□□□□ 0.45
CLPTM1O96005 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
CLPTM1O96005 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.88■□□□□ 0.45
CLPTM1O96005 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.88■□□□□ 0.45
CLPTM1O96005 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CLPTM1O96005 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.88■□□□□ 0.45
CLPTM1O96005 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 RBM17P2-201ENST00000616397 1405 ntBASIC17.88■□□□□ 0.45
CLPTM1O96005 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.88■□□□□ 0.45
CLPTM1O96005 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CLPTM1O96005 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.88■□□□□ 0.45
CLPTM1O96005 AL139384.1-201ENST00000612143 3047 ntBASIC17.88■□□□□ 0.45
CLPTM1O96005 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLPTM1O96005 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.87■□□□□ 0.45
CLPTM1O96005 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.87■□□□□ 0.45
CLPTM1O96005 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.87■□□□□ 0.45
CLPTM1O96005 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.87■□□□□ 0.45
CLPTM1O96005 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.87■□□□□ 0.45
CLPTM1O96005 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.87■□□□□ 0.45
CLPTM1O96005 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.87■□□□□ 0.45
CLPTM1O96005 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.87■□□□□ 0.45
CLPTM1O96005 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.87■□□□□ 0.45
CLPTM1O96005 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.87■□□□□ 0.45
CLPTM1O96005 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC17.87■□□□□ 0.45
CLPTM1O96005 AC231657.2-201ENST00000624556 255 ntBASIC17.87■□□□□ 0.45
CLPTM1O96005 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.87■□□□□ 0.45
CLPTM1O96005 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.87■□□□□ 0.45
CLPTM1O96005 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CLPTM1O96005 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
CLPTM1O96005 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
CLPTM1O96005 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.87■□□□□ 0.45
CLPTM1O96005 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.87■□□□□ 0.45
CLPTM1O96005 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLPTM1O96005 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CLPTM1O96005 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.86■□□□□ 0.45
CLPTM1O96005 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 AC126763.1-201ENST00000552015 2118 ntBASIC17.86■□□□□ 0.45
CLPTM1O96005 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.86■□□□□ 0.45
CLPTM1O96005 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.86■□□□□ 0.45
CLPTM1O96005 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CLPTM1O96005 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 CROCCP5-201ENST00000436658 830 ntBASIC17.86■□□□□ 0.45
CLPTM1O96005 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.86■□□□□ 0.45
CLPTM1O96005 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.86■□□□□ 0.45
CLPTM1O96005 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
CLPTM1O96005 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
CLPTM1O96005 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CLPTM1O96005 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.86■□□□□ 0.45
CLPTM1O96005 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CLPTM1O96005 AP001271.2-201ENST00000624018 1556 ntBASIC17.86■□□□□ 0.45
CLPTM1O96005 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 TEX21P-204ENST00000641479 1693 ntBASIC17.86■□□□□ 0.45
CLPTM1O96005 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CLPTM1O96005 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLPTM1O96005 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLPTM1O96005 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CLPTM1O96005 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CLPTM1O96005 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CLPTM1O96005 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms