Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CTDNEP1O95476 KRT8P32-201ENST00000512863 1461 ntBASIC22■■□□□ 1.11
CTDNEP1O95476 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22■■□□□ 1.11
CTDNEP1O95476 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CTDNEP1O95476 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC22■■□□□ 1.11
CTDNEP1O95476 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CTDNEP1O95476 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC22■■□□□ 1.11
CTDNEP1O95476 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 FSCN1P1-201ENST00000568912 1481 ntBASIC21.99■■□□□ 1.11
CTDNEP1O95476 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.99■■□□□ 1.11
CTDNEP1O95476 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CTDNEP1O95476 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.98■■□□□ 1.11
CTDNEP1O95476 AC005082.1-201ENST00000413042 2259 ntBASIC21.98■■□□□ 1.11
CTDNEP1O95476 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CTDNEP1O95476 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.98■■□□□ 1.11
CTDNEP1O95476 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CTDNEP1O95476 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CTDNEP1O95476 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.97■■□□□ 1.11
CTDNEP1O95476 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.97■■□□□ 1.11
CTDNEP1O95476 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTDNEP1O95476 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CTDNEP1O95476 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.97■■□□□ 1.11
CTDNEP1O95476 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.97■■□□□ 1.11
CTDNEP1O95476 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.97■■□□□ 1.11
CTDNEP1O95476 REXO1L10P-201ENST00000615707 1290 ntBASIC21.97■■□□□ 1.11
CTDNEP1O95476 REXO1L12P-201ENST00000622156 912 ntBASIC21.97■■□□□ 1.11
CTDNEP1O95476 TMEM191A-211ENST00000637163 1067 ntBASIC21.97■■□□□ 1.11
CTDNEP1O95476 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CTDNEP1O95476 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTDNEP1O95476 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CTDNEP1O95476 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.97■■□□□ 1.11
CTDNEP1O95476 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTDNEP1O95476 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CTDNEP1O95476 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CTDNEP1O95476 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTDNEP1O95476 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTDNEP1O95476 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTDNEP1O95476 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTDNEP1O95476 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CTDNEP1O95476 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 AC008622.2-201ENST00000617006 1229 ntBASIC21.96■■□□□ 1.11
CTDNEP1O95476 AL499627.1-201ENST00000569373 2188 ntBASIC21.96■■□□□ 1.11
CTDNEP1O95476 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.96■■□□□ 1.11
CTDNEP1O95476 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms