Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.73■□□□□ 0.91
CLDN3O15551 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
CLDN3O15551 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.73■□□□□ 0.91
CLDN3O15551 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.72■□□□□ 0.91
CLDN3O15551 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.72■□□□□ 0.91
CLDN3O15551 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 FP475955.4-201ENST00000623131 1990 ntBASIC20.72■□□□□ 0.91
CLDN3O15551 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.72■□□□□ 0.91
CLDN3O15551 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 AC005363.2-201ENST00000618631 242 ntBASIC20.72■□□□□ 0.91
CLDN3O15551 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CLDN3O15551 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
CLDN3O15551 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN3O15551 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.72■□□□□ 0.91
CLDN3O15551 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.71■□□□□ 0.91
CLDN3O15551 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.71■□□□□ 0.91
CLDN3O15551 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 AC098818.2-201ENST00000564925 2320 ntBASIC20.71■□□□□ 0.91
CLDN3O15551 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.71■□□□□ 0.91
CLDN3O15551 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
CLDN3O15551 AC010653.2-201ENST00000623505 997 ntBASIC20.71■□□□□ 0.91
CLDN3O15551 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CLDN3O15551 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.71■□□□□ 0.91
CLDN3O15551 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
CLDN3O15551 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CLDN3O15551 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CLDN3O15551 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN3O15551 AC018445.3-201ENST00000624177 1945 ntBASIC20.7■□□□□ 0.91
CLDN3O15551 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CLDN3O15551 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.7■□□□□ 0.9
CLDN3O15551 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.7■□□□□ 0.9
CLDN3O15551 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.7■□□□□ 0.9
CLDN3O15551 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.7■□□□□ 0.9
CLDN3O15551 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.7■□□□□ 0.9
CLDN3O15551 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
CLDN3O15551 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.7■□□□□ 0.9
CLDN3O15551 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CLDN3O15551 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.7■□□□□ 0.9
CLDN3O15551 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
CLDN3O15551 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CLDN3O15551 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
CLDN3O15551 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.69■□□□□ 0.9
CLDN3O15551 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.69■□□□□ 0.9
CLDN3O15551 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.69■□□□□ 0.9
CLDN3O15551 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.69■□□□□ 0.9
CLDN3O15551 SLC25A3P1-201ENST00000443844 931 ntBASIC20.69■□□□□ 0.9
CLDN3O15551 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 FAM87A-204ENST00000613235 858 ntBASIC20.69■□□□□ 0.9
CLDN3O15551 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CLDN3O15551 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CLDN3O15551 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CLDN3O15551 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CLDN3O15551 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
CLDN3O15551 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CLDN3O15551 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.69■□□□□ 0.9
CLDN3O15551 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.69■□□□□ 0.9
CLDN3O15551 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CLDN3O15551 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN3O15551 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.68■□□□□ 0.9
CLDN3O15551 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CLDN3O15551 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms