Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.28■□□□□ 0.52
SLC28A1O00337 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SLC28A1O00337 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SLC28A1O00337 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
SLC28A1O00337 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SLC28A1O00337 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
SLC28A1O00337 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
SLC28A1O00337 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.27■□□□□ 0.52
SLC28A1O00337 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.27■□□□□ 0.52
SLC28A1O00337 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.27■□□□□ 0.52
SLC28A1O00337 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.27■□□□□ 0.52
SLC28A1O00337 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.27■□□□□ 0.52
SLC28A1O00337 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.27■□□□□ 0.52
SLC28A1O00337 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SLC28A1O00337 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
SLC28A1O00337 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC28A1O00337 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC28A1O00337 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.51
SLC28A1O00337 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.27■□□□□ 0.51
SLC28A1O00337 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.27■□□□□ 0.51
SLC28A1O00337 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.27■□□□□ 0.51
SLC28A1O00337 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
SLC28A1O00337 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.27■□□□□ 0.51
SLC28A1O00337 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC28A1O00337 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC28A1O00337 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SLC28A1O00337 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 AC104581.1-202ENST00000635932 2618 ntBASIC18.26■□□□□ 0.51
SLC28A1O00337 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SLC28A1O00337 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
SLC28A1O00337 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.26■□□□□ 0.51
SLC28A1O00337 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 KRT16P5-201ENST00000455284 522 ntBASIC18.26■□□□□ 0.51
SLC28A1O00337 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 KRT8P41-201ENST00000533985 1514 ntBASIC18.26■□□□□ 0.51
SLC28A1O00337 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 AC005082.1-201ENST00000413042 2259 ntBASIC18.26■□□□□ 0.51
SLC28A1O00337 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.26■□□□□ 0.51
SLC28A1O00337 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SLC28A1O00337 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC28A1O00337 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC28A1O00337 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.25■□□□□ 0.51
SLC28A1O00337 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC28A1O00337 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.25■□□□□ 0.51
SLC28A1O00337 KRASP1-201ENST00000407852 552 ntBASIC18.25■□□□□ 0.51
SLC28A1O00337 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.25■□□□□ 0.51
SLC28A1O00337 AL023875.1-201ENST00000640777 796 ntBASIC18.25■□□□□ 0.51
SLC28A1O00337 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
SLC28A1O00337 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.25■□□□□ 0.51
SLC28A1O00337 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.25■□□□□ 0.51
SLC28A1O00337 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.25■□□□□ 0.51
SLC28A1O00337 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SLC28A1O00337 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SLC28A1O00337 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.24■□□□□ 0.51
SLC28A1O00337 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms