Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC15.46■□□□□ 0.07
TRAV40A0A0B4J280 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
TRAV40A0A0B4J280 ME2-218ENST00000640965 2476 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 FAM8A6P-201ENST00000407496 1135 ntBASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 MIR4674-201ENST00000582457 87 ntBASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 AC011558.1-201ENST00000623459 338 ntBASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 AL031432.5-201ENST00000641059 760 ntBASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 AC007952.6-201ENST00000573168 2673 ntBASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 AC003957.1-201ENST00000625108 2673 ntBASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.45■□□□□ 0.06
TRAV40A0A0B4J280 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 SAPCD2P2-201ENST00000431719 1174 ntBASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 HOMER2P1-201ENST00000455653 964 ntBASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 AL441883.1-201ENST00000566170 1045 ntBASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 TREX1-205ENST00000625293 1783 ntBASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
TRAV40A0A0B4J280 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TRAV40A0A0B4J280 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms