Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 RNU6-787P-201ENST00000384032 107 ntBASIC7.19□□□□□ -1.26
NCBP3Q53F19 CHEK2P5-201ENST00000423877 246 ntBASIC7.19□□□□□ -1.26
NCBP3Q53F19 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC7.19□□□□□ -1.26
NCBP3Q53F19 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC7.19□□□□□ -1.26
NCBP3Q53F19 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC7.19□□□□□ -1.26
NCBP3Q53F19 RN7SL787P-201ENST00000613000 284 ntBASIC7.19□□□□□ -1.26
NCBP3Q53F19 MIR6886-201ENST00000619864 61 ntBASIC7.19□□□□□ -1.26
NCBP3Q53F19 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC7.19□□□□□ -1.26
NCBP3Q53F19 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC7.19□□□□□ -1.26
NCBP3Q53F19 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC7.19□□□□□ -1.26
NCBP3Q53F19 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC7.19□□□□□ -1.26
NCBP3Q53F19 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
NCBP3Q53F19 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
NCBP3Q53F19 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
NCBP3Q53F19 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC7.18□□□□□ -1.26
NCBP3Q53F19 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
NCBP3Q53F19 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
NCBP3Q53F19 RN7SKP267-201ENST00000410381 285 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 ATP6V0E1P1-201ENST00000412537 226 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 RNA5SP57-201ENST00000459463 123 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 MIR449C-201ENST00000516047 92 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 RNU6-693P-201ENST00000516134 107 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 SUMO2P16-201ENST00000519475 264 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC7.18□□□□□ -1.26
NCBP3Q53F19 TRAV8-5-201ENST00000537369 341 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 HIGD1AP1-201ENST00000550979 275 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC7.18□□□□□ -1.26
NCBP3Q53F19 AL359955.1-201ENST00000455242 3275 ntBASIC7.18□□□□□ -1.26
NCBP3Q53F19 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
NCBP3Q53F19 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
NCBP3Q53F19 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
NCBP3Q53F19 AC006504.1-201ENST00000562493 3666 ntBASIC7.17□□□□□ -1.26
NCBP3Q53F19 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC7.17□□□□□ -1.26
NCBP3Q53F19 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
NCBP3Q53F19 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC7.17□□□□□ -1.26
NCBP3Q53F19 NLN-202ENST00000502464 8354 ntTSL 5 BASIC7.17□□□□□ -1.26
NCBP3Q53F19 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC7.17□□□□□ -1.26
NCBP3Q53F19 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC7.17□□□□□ -1.26
NCBP3Q53F19 RNA5SP132-201ENST00000364725 118 ntBASIC7.17□□□□□ -1.26
NCBP3Q53F19 SNORD24-201ENST00000383884 75 ntBASIC7.17□□□□□ -1.26
NCBP3Q53F19 AC079355.1-201ENST00000421770 223 ntBASIC7.17□□□□□ -1.26
NCBP3Q53F19 RNU6-513P-201ENST00000516104 104 ntBASIC7.17□□□□□ -1.26
NCBP3Q53F19 Y_RNA.666-201ENST00000516187 112 ntBASIC7.17□□□□□ -1.26
NCBP3Q53F19 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
NCBP3Q53F19 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC7.17□□□□□ -1.26
NCBP3Q53F19 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC7.17□□□□□ -1.26
NCBP3Q53F19 OR56B2P-202ENST00000641377 2453 ntBASIC7.17□□□□□ -1.26
NCBP3Q53F19 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
NCBP3Q53F19 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 RNA5SP242-201ENST00000364171 118 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 RNA5SP487-201ENST00000410186 122 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 RNU2-49P-201ENST00000410666 184 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 SRSF1P1-201ENST00000424058 520 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 RPL30P4-201ENST00000429309 333 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 NDUFA4P2-201ENST00000489989 244 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 PPBPP1-201ENST00000510807 373 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 RNU7-61P-201ENST00000515897 61 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 AC021443.1-201ENST00000604478 211 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 AC211433.2-201ENST00000608433 387 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 HOTTIP_3.1-201ENST00000619957 337 ntBASIC7.16□□□□□ -1.26
NCBP3Q53F19 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
NCBP3Q53F19 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
NCBP3Q53F19 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
NCBP3Q53F19 AC000403.1-201ENST00000613696 3585 ntBASIC7.15□□□□□ -1.26
NCBP3Q53F19 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
NCBP3Q53F19 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
NCBP3Q53F19 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
NCBP3Q53F19 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC7.15□□□□□ -1.26
NCBP3Q53F19 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.15□□□□□ -1.26
NCBP3Q53F19 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC7.15□□□□□ -1.26
NCBP3Q53F19 RPL36AP10-201ENST00000421785 322 ntBASIC7.15□□□□□ -1.26
NCBP3Q53F19 AC073261.1-201ENST00000429409 121 ntBASIC7.15□□□□□ -1.26
NCBP3Q53F19 snoU13.28-201ENST00000459235 104 ntBASIC7.15□□□□□ -1.26
NCBP3Q53F19 COX6B1P5-201ENST00000509843 249 ntBASIC7.15□□□□□ -1.26
NCBP3Q53F19 AC109583.2-201ENST00000617367 129 ntBASIC7.15□□□□□ -1.26
NCBP3Q53F19 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
NCBP3Q53F19 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC7.15□□□□□ -1.26
NCBP3Q53F19 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
NCBP3Q53F19 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
NCBP3Q53F19 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC7.14□□□□□ -1.27
NCBP3Q53F19 SNORA4.2-201ENST00000365313 147 ntBASIC7.14□□□□□ -1.27
NCBP3Q53F19 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
NCBP3Q53F19 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
NCBP3Q53F19 RPL23AP52-201ENST00000439311 478 ntBASIC7.14□□□□□ -1.27
NCBP3Q53F19 SSX6-203ENST00000509958 336 ntTSL 3 BASIC7.14□□□□□ -1.27
NCBP3Q53F19 AC097462.1-201ENST00000514125 324 ntBASIC7.14□□□□□ -1.27
NCBP3Q53F19 RNU6-162P-201ENST00000516228 103 ntBASIC7.14□□□□□ -1.27
NCBP3Q53F19 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC7.14□□□□□ -1.27
NCBP3Q53F19 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC7.14□□□□□ -1.27
NCBP3Q53F19 AC000068.2-201ENST00000608816 460 ntBASIC7.14□□□□□ -1.27
NCBP3Q53F19 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
NCBP3Q53F19 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
NCBP3Q53F19 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms