Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RNU6-630P-201ENST00000391258 106 ntBASIC8.39□□□□□ -1.07
SENP3Q9H4L4 PPIAP31-201ENST00000405422 495 ntBASIC8.39□□□□□ -1.07
SENP3Q9H4L4 AC074101.1-201ENST00000637861 241 ntBASIC8.39□□□□□ -1.07
SENP3Q9H4L4 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 FSHR-202ENST00000406846 2784 ntAPPRIS P4 TSL 1 (best) BASIC8.39□□□□□ -1.07
SENP3Q9H4L4 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 POT1-202ENST00000393329 3950 ntTSL 5 BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 MDM4-205ENST00000391947 10008 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 U8.4-201ENST00000363626 134 ntBASIC8.38□□□□□ -1.07
SENP3Q9H4L4 SNORD31B-201ENST00000364977 69 ntBASIC8.38□□□□□ -1.07
SENP3Q9H4L4 DBIP2-201ENST00000419076 262 ntBASIC8.38□□□□□ -1.07
SENP3Q9H4L4 MIR1254-2-201ENST00000579553 63 ntBASIC8.38□□□□□ -1.07
SENP3Q9H4L4 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 ZNF585A-201ENST00000292841 8618 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC8.38□□□□□ -1.07
SENP3Q9H4L4 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 AC114755.2-201ENST00000413520 361 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 SDC4P-201ENST00000453285 601 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 RPS29P33-201ENST00000456717 146 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 RNU7-45P-201ENST00000459460 63 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 RNU7-96P-201ENST00000459535 64 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 MIR4796-201ENST00000580742 81 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 SDAD1P1-202ENST00000524156 2051 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 FAM35BP-202ENST00000497389 3337 ntBASIC8.37□□□□□ -1.07
SENP3Q9H4L4 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
SENP3Q9H4L4 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC8.36□□□□□ -1.07
SENP3Q9H4L4 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC8.36□□□□□ -1.07
SENP3Q9H4L4 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC8.36□□□□□ -1.07
SENP3Q9H4L4 Y_RNA.267-201ENST00000364679 109 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 MIR765-201ENST00000390226 114 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 AL135938.1-201ENST00000443141 297 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 RN7SL222P-201ENST00000476452 299 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 RN7SL97P-201ENST00000486780 299 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 RNU6-977P-201ENST00000516411 103 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC8.36□□□□□ -1.07
SENP3Q9H4L4 MIR4646-201ENST00000580775 63 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 MIR6837-201ENST00000620884 64 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 MIR8080-201ENST00000622224 89 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
SENP3Q9H4L4 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
SENP3Q9H4L4 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC8.36□□□□□ -1.07
SENP3Q9H4L4 AC005618.1-201ENST00000606901 3148 ntBASIC8.36□□□□□ -1.07
SENP3Q9H4L4 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 RNU6-1181P-201ENST00000384191 106 ntBASIC8.35□□□□□ -1.07
SENP3Q9H4L4 HIST1H3PS1-201ENST00000404612 417 ntBASIC8.35□□□□□ -1.07
SENP3Q9H4L4 AC060773.1-201ENST00000421698 310 ntBASIC8.35□□□□□ -1.07
SENP3Q9H4L4 AC091953.3-201ENST00000623220 236 ntBASIC8.35□□□□□ -1.07
SENP3Q9H4L4 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 KLF18-201ENST00000634670 3159 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 AC092821.3-202ENST00000641304 2767 ntBASIC8.35□□□□□ -1.07
SENP3Q9H4L4 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 AC022905.1-201ENST00000503430 3048 ntBASIC8.35□□□□□ -1.07
SENP3Q9H4L4 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
SENP3Q9H4L4 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 RNU6-480P-201ENST00000384332 107 ntBASIC8.34□□□□□ -1.07
SENP3Q9H4L4 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 AC107083.1-201ENST00000439643 279 ntBASIC8.34□□□□□ -1.07
SENP3Q9H4L4 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC8.34□□□□□ -1.07
SENP3Q9H4L4 ACA64.4-201ENST00000459070 127 ntBASIC8.34□□□□□ -1.07
SENP3Q9H4L4 SNORD4B-201ENST00000459083 72 ntBASIC8.34□□□□□ -1.07
SENP3Q9H4L4 AC097484.1-201ENST00000471148 389 ntBASIC8.34□□□□□ -1.07
SENP3Q9H4L4 RN7SL459P-201ENST00000481078 302 ntBASIC8.34□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 195.2 ms