Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 MCC-208ENST00000514701 2855 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 AC142381.4-202ENST00000563973 229 ntBASIC15.37■□□□□ 0.05
FOXA2Q9Y261 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 AC079598.2-202ENST00000546624 1451 ntBASIC15.37■□□□□ 0.05
FOXA2Q9Y261 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
FOXA2Q9Y261 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 AL158047.1-201ENST00000445918 881 ntBASIC15.36■□□□□ 0.05
FOXA2Q9Y261 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 AL359736.2-201ENST00000621992 437 ntBASIC15.36■□□□□ 0.05
FOXA2Q9Y261 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 AL512353.2-201ENST00000448759 1962 ntBASIC15.36■□□□□ 0.05
FOXA2Q9Y261 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
FOXA2Q9Y261 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 WIZP1-201ENST00000531444 2299 ntBASIC15.35■□□□□ 0.05
FOXA2Q9Y261 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 GCSHP5-201ENST00000443090 522 ntBASIC15.35■□□□□ 0.05
FOXA2Q9Y261 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 KRT16P5-201ENST00000455284 522 ntBASIC15.35■□□□□ 0.05
FOXA2Q9Y261 AC098590.1-201ENST00000468126 897 ntBASIC15.35■□□□□ 0.05
FOXA2Q9Y261 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 AC020763.4-201ENST00000623414 4170 ntBASIC15.35■□□□□ 0.05
FOXA2Q9Y261 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.35■□□□□ 0.05
FOXA2Q9Y261 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms